Atomistry » Chlorine » PDB 3tnn-3txe » 3toz
Atomistry »
  Chlorine »
    PDB 3tnn-3txe »
      3toz »

Chlorine in PDB 3toz: 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.

Enzymatic activity of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.

All present enzymatic activity of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.:
1.1.1.25;

Protein crystallography data

The structure of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad., PDB code: 3toz was solved by G.Minasov, S.H.Light, A.Halavaty, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.63 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.130, 78.434, 214.829, 90.00, 90.49, 90.00
R / Rfree (%) 19.5 / 25.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. (pdb code 3toz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad., PDB code: 3toz:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3toz

Go back to Chlorine Binding Sites List in 3toz
Chlorine binding site 1 out of 4 in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl293

b:70.8
occ:1.00
 O C:HOH1019 2.9 58.6 1.0
N C:LYS132 3.8 61.1 1.0
CB C:LYS131 4.0 60.6 1.0
O C:GLU202 4.2 47.8 1.0
CA C:LYS131 4.2 60.2 1.0
CB C:LYS132 4.4 63.4 1.0
CG C:LYS131 4.4 64.6 1.0
C C:LYS131 4.5 59.8 1.0
CA C:LYS132 4.7 61.2 1.0
N C:VAL204 4.8 43.2 1.0
CB C:VAL204 4.8 45.8 1.0
CD C:LYS131 4.9 68.5 1.0

Chlorine binding site 2 out of 4 in 3toz

Go back to Chlorine Binding Sites List in 3toz
Chlorine binding site 2 out of 4 in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl294

b:47.8
occ:0.70
 CB C:LYS77 3.6 34.6 1.0
CG C:MET74 3.7 40.4 0.5
N C:LYS77 3.8 34.1 1.0
CA C:MET74 3.9 36.3 0.5
C C:PRO75 4.0 34.7 1.0
CA C:MET74 4.0 36.9 0.5
CG C:LYS77 4.0 36.5 1.0
CA C:PRO75 4.0 36.3 1.0
CB C:MET74 4.2 38.6 0.5
CA C:LYS77 4.2 33.8 1.0
N C:ASN76 4.2 34.4 1.0
O C:PRO75 4.3 37.1 1.0
CD C:LYS77 4.3 38.7 1.0
N C:THR78 4.3 37.2 1.0
CB C:MET74 4.4 39.2 0.5
CG C:MET74 4.4 44.6 0.5
O C:HOH346 4.4 43.4 1.0
CG2 C:THR78 4.5 40.0 1.0
N C:MET74 4.6 34.2 0.5
N C:MET74 4.6 34.5 0.5
OG1 C:THR78 4.7 45.8 1.0
C C:ASN76 4.7 33.6 1.0
C C:LYS77 4.8 34.6 1.0
SD C:MET74 4.8 48.3 0.5
N C:PRO75 4.9 35.8 1.0
CA C:ASN76 5.0 33.5 1.0

Chlorine binding site 3 out of 4 in 3toz

Go back to Chlorine Binding Sites List in 3toz
Chlorine binding site 3 out of 4 in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl293

b:51.5
occ:0.50
 N E:GLU232 3.3 42.1 1.0
CD E:PRO231 3.5 46.1 1.0
CB E:PRO231 3.6 44.3 1.0
CG E:GLU232 3.6 49.1 1.0
N E:PRO231 3.7 44.0 1.0
CG E:PRO231 3.7 45.8 1.0
CB E:GLU232 3.8 44.6 1.0
CB E:ARG230 4.0 43.5 1.0
CA E:PRO231 4.0 43.5 1.0
CG E:ARG230 4.1 40.4 1.0
C E:PRO231 4.1 41.9 1.0
CA E:GLU232 4.1 42.4 1.0
CD E:GLU232 4.2 54.6 1.0
OE1 E:GLU232 4.3 55.3 1.0
C E:ARG230 4.3 42.4 1.0
CD E:ARG230 4.3 37.9 1.0
CA E:ARG230 4.7 43.0 1.0
NE E:ARG230 5.0 39.7 1.0
OE2 E:GLU232 5.0 56.0 1.0

Chlorine binding site 4 out of 4 in 3toz

Go back to Chlorine Binding Sites List in 3toz
Chlorine binding site 4 out of 4 in the 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl293

b:48.7
occ:0.50
 O H:HOH1015 2.6 52.9 1.0
N H:LYS132 3.3 36.1 1.0
CB H:LYS131 3.6 41.6 1.0
O H:GLU202 3.7 36.6 1.0
CA H:LYS131 3.7 40.3 1.0
CG1 H:VAL204 3.8 42.6 1.0
CB H:LYS132 3.9 35.9 1.0
CG H:LYS131 3.9 44.9 1.0
C H:LYS131 4.0 38.1 1.0
CA H:LYS132 4.2 34.7 1.0
N H:VAL204 4.4 34.3 1.0
O H:LYS132 4.7 31.7 1.0
C H:GLU202 4.8 35.8 1.0
CB H:VAL204 4.9 36.9 1.0
CA H:SER203 4.9 33.4 1.0
C H:SER203 4.9 34.1 1.0
C H:LYS132 4.9 34.0 1.0

Reference:

G.Minasov, S.H.Light, A.Halavaty, L.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.2 Angstrom Crystal Structure of Shikimate 5-Dehydrogenase From Listeria Monocytogenes in Complex with Nad. To Be Published.
Page generated: Sat Dec 12 10:12:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy