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Chlorine in PDB 3u3g: Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1

Enzymatic activity of Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1

All present enzymatic activity of Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1:
3.1.26.4;

Protein crystallography data

The structure of Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1, PDB code: 3u3g was solved by T.N.Nguyen, C.Angkawidjaja, E.Kanaya, Y.Koga, K.Takano, S.Kanaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.76 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.315, 104.891, 57.212, 90.00, 110.34, 90.00
R / Rfree (%) 17.2 / 19.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1 (pdb code 3u3g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1, PDB code: 3u3g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3u3g

Go back to Chlorine Binding Sites List in 3u3g
Chlorine binding site 1 out of 2 in the Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl201

b:18.1
occ:1.00
 O C:HOH477 2.7 31.1 1.0
O C:HOH394 2.7 20.1 1.0
OXT C:SER140 2.8 24.4 1.0
O C:LYS137 2.8 13.7 1.0
O C:ALA138 2.9 16.5 1.0
C C:ALA138 3.5 12.9 1.0
OG C:SER140 3.6 24.6 1.0
C C:SER140 3.6 22.2 1.0
N C:SER140 3.8 19.2 1.0
O C:HOH381 3.9 20.9 1.0
O C:HOH451 3.9 38.1 1.0
CA C:ALA138 3.9 13.8 1.0
C C:LYS137 3.9 13.0 1.0
CA C:SER140 4.2 22.2 1.0
O C:HOH424 4.2 25.3 1.0
N C:LEU139 4.4 14.1 1.0
N C:ALA138 4.4 13.3 1.0
C C:LEU139 4.4 19.5 1.0
CB C:SER140 4.5 18.3 1.0
O C:HOH474 4.5 38.4 1.0
O C:SER140 4.5 26.6 1.0
CA C:LEU139 4.9 17.7 1.0

Chlorine binding site 2 out of 2 in 3u3g

Go back to Chlorine Binding Sites List in 3u3g
Chlorine binding site 2 out of 2 in the Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of LC11-Rnase H1 Isolated From Compost By Metagenomic Approach: Insight Into the Structural Bases For Unusual Enzymatic Properties of Sto-Rnase H1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:17.3
occ:1.00
 O A:GLY10 2.6 10.7 1.0
OE2 A:GLU49 2.7 10.5 1.0
O A:HOH444 2.7 24.5 1.0
O A:HOH394 2.7 19.8 1.0
O A:HOH498 2.9 31.1 1.0
OD1 A:ASP9 3.0 13.8 1.0
CD A:GLU49 3.5 9.2 1.0
O A:HOH415 3.6 21.5 1.0
CG A:ASP9 3.7 10.8 1.0
CG A:GLU49 3.8 9.6 1.0
C A:GLY10 3.8 7.9 1.0
OD2 A:ASP9 3.8 20.9 1.0
ND2 A:ASN45 4.2 11.2 1.0
O D:HOH271 4.2 24.1 1.0
OD1 A:ASN45 4.2 10.8 1.0
NH1 D:ARG55 4.3 10.0 1.0
O D:HOH214 4.4 13.9 1.0
O A:HOH420 4.4 23.6 1.0
O A:HOH361 4.4 14.9 1.0
N A:GLY10 4.5 6.7 1.0
CA A:GLY11 4.5 9.5 1.0
O A:HOH378 4.6 19.5 1.0
N A:GLY11 4.6 7.1 1.0
CG A:ASN45 4.7 8.6 1.0
OE1 A:GLU49 4.7 10.5 1.0
CB A:SER78 4.7 9.1 1.0
O A:HOH407 4.8 21.1 1.0
CA A:GLY10 4.8 5.9 1.0

Reference:

T.N.Nguyen, C.Angkawidjaja, E.Kanaya, Y.Koga, K.Takano, S.Kanaya. Activity, Stability, and Structure of Metagenome-Derived LC11-Rnase H1, A Homolog of Sulfolobus Tokodaii Rnase H1 Protein Sci. V. 21 553 2012.
ISSN: ISSN 0961-8368
PubMed: 22389131
DOI: 10.1002/PRO.2043
Page generated: Sun Jul 21 05:48:23 2024

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