Atomistry » Chlorine » PDB 3u69-3ue4 » 3u8u
Atomistry »
  Chlorine »
    PDB 3u69-3ue4 »
      3u8u »

Chlorine in PDB 3u8u: Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form

Enzymatic activity of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form

All present enzymatic activity of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form:
4.2.99.18;

Protein crystallography data

The structure of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form, PDB code: 3u8u was solved by R.Agarwal, M.D.Naidu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.71 / 2.15
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 95.840, 97.284, 132.150, 90.00, 90.91, 90.00
R / Rfree (%) 19.8 / 24.3

Other elements in 3u8u:

The structure of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form (pdb code 3u8u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form, PDB code: 3u8u:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3u8u

Go back to Chlorine Binding Sites List in 3u8u
Chlorine binding site 1 out of 4 in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl320

b:36.0
occ:1.00
 NH2 A:ARG156 3.1 24.3 1.0
O A:HOH544 3.2 45.6 1.0
N A:ASN174 3.2 22.2 1.0
O A:HOH372 3.4 27.8 1.0
OH A:TYR171 3.4 30.2 1.0
NH1 A:ARG156 3.5 22.4 1.0
CZ A:TYR171 3.6 24.8 1.0
CB A:ASN174 3.7 25.6 1.0
CZ A:ARG156 3.8 24.5 1.0
CE2 A:TYR171 3.8 22.8 1.0
O A:HOH362 3.8 19.0 1.0
CA A:PRO173 3.8 22.4 1.0
C A:PRO173 4.0 23.6 1.0
CA A:ASN174 4.1 23.7 1.0
O A:VAL172 4.2 18.6 1.0
CE1 A:TYR171 4.4 25.6 1.0
OD1 A:ASN212 4.4 23.6 1.0
O A:HOH395 4.6 31.8 1.0
CD2 A:TYR171 4.7 24.5 1.0
CB A:PRO173 4.8 25.0 1.0
OG A:SER129 4.8 40.0 1.0
N A:PRO173 4.8 22.7 1.0
C A:VAL172 4.9 20.9 1.0
O A:ASN174 4.9 24.1 1.0

Chlorine binding site 2 out of 4 in 3u8u

Go back to Chlorine Binding Sites List in 3u8u
Chlorine binding site 2 out of 4 in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl320

b:45.6
occ:1.00
 N B:ASN174 3.2 28.5 1.0
NH2 B:ARG156 3.3 24.6 1.0
O B:HOH567 3.4 34.2 1.0
NH1 B:ARG156 3.5 28.5 1.0
CB B:ASN174 3.5 29.7 1.0
CZ B:ARG156 3.8 25.8 1.0
CE2 B:TYR171 3.9 26.8 1.0
O B:HOH480 3.9 29.6 1.0
OH B:TYR171 3.9 26.6 1.0
CA B:ASN174 4.0 29.1 1.0
CZ B:TYR171 4.0 30.0 1.0
CA B:PRO173 4.1 26.2 1.0
C B:PRO173 4.1 27.3 1.0
O B:VAL172 4.3 24.1 1.0
CD2 B:TYR171 4.7 24.8 1.0
OD1 B:ASN212 4.7 30.6 1.0
O B:TYR128 4.7 41.5 1.0
CE1 B:TYR171 4.8 27.5 1.0
CG B:ASN174 4.9 33.4 1.0
N B:PRO173 4.9 25.4 1.0
O B:ASN174 5.0 29.7 1.0
C B:VAL172 5.0 23.6 1.0

Chlorine binding site 3 out of 4 in 3u8u

Go back to Chlorine Binding Sites List in 3u8u
Chlorine binding site 3 out of 4 in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl320

b:34.7
occ:1.00
 NH2 C:ARG156 3.1 26.8 1.0
N C:ASN174 3.2 26.7 1.0
O C:HOH359 3.2 32.5 1.0
O C:HOH744 3.3 42.2 1.0
NH1 C:ARG156 3.3 23.6 1.0
CZ C:ARG156 3.7 26.8 1.0
CE2 C:TYR171 3.8 26.8 1.0
CB C:ASN174 3.8 30.5 1.0
O C:HOH334 3.8 26.9 1.0
OH C:TYR171 3.8 31.7 1.0
CA C:PRO173 3.9 26.4 1.0
CZ C:TYR171 3.9 28.7 1.0
C C:PRO173 4.1 26.8 1.0
CA C:ASN174 4.1 28.6 1.0
OH C:TYR128 4.1 43.6 1.0
O C:VAL172 4.1 21.6 1.0
CD2 C:TYR171 4.5 26.2 1.0
OD1 C:ASN212 4.6 29.8 1.0
CZ C:TYR128 4.7 46.6 1.0
CE1 C:TYR128 4.7 49.4 1.0
CE1 C:TYR171 4.8 24.0 1.0
CB C:PRO173 4.9 26.3 1.0
N C:PRO173 4.9 23.8 1.0
C C:VAL172 4.9 22.7 1.0
NE C:ARG156 5.0 27.0 1.0

Chlorine binding site 4 out of 4 in 3u8u

Go back to Chlorine Binding Sites List in 3u8u
Chlorine binding site 4 out of 4 in the Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl320

b:40.9
occ:1.00
 O F:HOH361 2.9 43.0 1.0
NH2 F:ARG156 3.1 34.7 1.0
N F:ASN174 3.4 28.7 1.0
NH1 F:ARG156 3.5 32.1 1.0
CE2 F:TYR171 3.7 28.0 1.0
CZ F:ARG156 3.8 30.5 1.0
CB F:ASN174 3.8 33.0 1.0
OH F:TYR171 3.8 33.8 1.0
CZ F:TYR171 3.9 36.6 1.0
CA F:PRO173 4.0 26.6 1.0
O F:HOH349 4.0 24.3 1.0
OH F:TYR128 4.1 51.9 1.0
C F:PRO173 4.2 28.9 1.0
CA F:ASN174 4.2 31.2 1.0
O F:VAL172 4.3 24.1 1.0
CD2 F:TYR171 4.6 30.0 1.0
CZ F:TYR128 4.6 47.8 1.0
CE1 F:TYR128 4.7 45.2 1.0
OD1 F:ASN212 4.7 32.3 1.0
CE1 F:TYR171 4.8 32.1 1.0
N F:PRO173 4.9 25.0 1.0
CB F:PRO173 4.9 24.5 1.0
C F:VAL172 5.0 24.6 1.0

Reference:

R.Agarwal, M.D.Naidu. Crystal Structure of Human Apurinic/Apyridinimic Endonuclease, APE1 in A New Crystal Form To Be Published.
Page generated: Sat Dec 12 10:14:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy