Chlorine in PDB 3udb: Crystal Structure of SNRK2.6
Enzymatic activity of Crystal Structure of SNRK2.6
All present enzymatic activity of Crystal Structure of SNRK2.6:
2.7.11.1;
Protein crystallography data
The structure of Crystal Structure of SNRK2.6, PDB code: 3udb
was solved by
T.Xie,
R.Ren,
Y.Pang,
C.Yan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.08 /
2.57
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
228.094,
98.793,
113.103,
90.00,
98.48,
90.00
|
R / Rfree (%)
|
23.6 /
25.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of SNRK2.6
(pdb code 3udb). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of SNRK2.6, PDB code: 3udb:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 1 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl318
b:84.0
occ:1.00
|
CA
|
A:SER113
|
4.1
|
32.8
|
1.0
|
N
|
A:SER113
|
4.1
|
38.6
|
1.0
|
OE2
|
F:GLU22
|
4.2
|
90.2
|
1.0
|
NH1
|
A:ARG111
|
4.2
|
45.8
|
1.0
|
O
|
A:PHE112
|
4.3
|
28.2
|
1.0
|
C
|
A:PHE112
|
4.3
|
39.4
|
1.0
|
CB
|
A:SER113
|
4.4
|
36.5
|
1.0
|
O
|
A:ARG111
|
4.4
|
42.0
|
1.0
|
CZ
|
A:ARG111
|
4.7
|
53.2
|
1.0
|
CD
|
F:GLU22
|
4.7
|
90.2
|
1.0
|
CG
|
A:ARG111
|
4.9
|
31.6
|
1.0
|
O
|
A:HOH319
|
4.9
|
42.8
|
0.9
|
OE1
|
F:GLU22
|
5.0
|
82.6
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 2 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl318
b:88.0
occ:1.00
|
O
|
B:PHE112
|
4.2
|
43.6
|
1.0
|
CZ
|
B:ARG111
|
4.3
|
54.1
|
1.0
|
NH2
|
B:ARG111
|
4.3
|
56.1
|
1.0
|
O
|
B:ARG111
|
4.3
|
40.9
|
1.0
|
N
|
B:SER113
|
4.3
|
55.9
|
1.0
|
CA
|
B:SER113
|
4.3
|
51.7
|
1.0
|
NH1
|
B:ARG111
|
4.4
|
44.7
|
1.0
|
C
|
B:PHE112
|
4.4
|
42.5
|
1.0
|
CB
|
B:SER113
|
4.7
|
51.6
|
1.0
|
CG
|
B:ARG111
|
4.8
|
38.3
|
1.0
|
NE
|
B:ARG111
|
4.9
|
60.7
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 3 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl318
b:86.6
occ:1.00
|
CA
|
C:SER113
|
3.9
|
27.7
|
1.0
|
N
|
C:SER113
|
4.1
|
42.8
|
1.0
|
CB
|
C:SER113
|
4.2
|
21.2
|
1.0
|
NH2
|
C:ARG111
|
4.2
|
49.5
|
1.0
|
O
|
C:PHE112
|
4.3
|
30.1
|
1.0
|
C
|
C:PHE112
|
4.4
|
34.1
|
1.0
|
CD
|
D:ARG39
|
4.5
|
68.1
|
1.0
|
O
|
C:ARG111
|
4.5
|
32.7
|
1.0
|
O
|
C:HOH324
|
4.7
|
43.6
|
1.0
|
CZ
|
C:ARG111
|
4.7
|
49.5
|
1.0
|
OE2
|
D:GLU22
|
4.7
|
71.0
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 4 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl318
b:92.0
occ:1.00
|
CA
|
D:SER113
|
4.0
|
50.2
|
1.0
|
N
|
D:SER113
|
4.1
|
50.3
|
1.0
|
O
|
D:HOH335
|
4.1
|
45.9
|
0.9
|
OE2
|
C:GLU22
|
4.1
|
82.7
|
1.0
|
CB
|
D:SER113
|
4.2
|
48.6
|
1.0
|
C
|
D:PHE112
|
4.5
|
55.4
|
1.0
|
O
|
D:ARG111
|
4.5
|
35.8
|
1.0
|
O
|
D:PHE112
|
4.6
|
63.1
|
1.0
|
NH1
|
D:ARG111
|
4.7
|
41.8
|
1.0
|
CG2
|
C:VAL24
|
4.7
|
47.2
|
1.0
|
CD
|
C:GLU22
|
4.7
|
90.0
|
1.0
|
CG
|
D:ARG111
|
4.8
|
43.5
|
1.0
|
CD
|
C:ARG39
|
4.8
|
64.8
|
1.0
|
CZ
|
D:ARG111
|
4.8
|
45.4
|
1.0
|
OE1
|
C:GLU22
|
4.9
|
93.0
|
1.0
|
NE
|
C:ARG39
|
4.9
|
79.5
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 5 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl318
b:86.7
occ:1.00
|
CA
|
E:SER113
|
3.9
|
34.6
|
1.0
|
N
|
E:SER113
|
4.0
|
49.8
|
1.0
|
CB
|
E:SER113
|
4.2
|
37.2
|
1.0
|
C
|
E:PHE112
|
4.3
|
40.8
|
1.0
|
O
|
E:PHE112
|
4.4
|
35.4
|
1.0
|
NH2
|
E:ARG111
|
4.4
|
61.2
|
1.0
|
CZ
|
E:ARG111
|
4.5
|
58.3
|
1.0
|
O
|
E:ARG111
|
4.7
|
47.9
|
1.0
|
NH1
|
E:ARG111
|
4.8
|
62.3
|
1.0
|
NE
|
E:ARG111
|
4.8
|
57.2
|
1.0
|
CG
|
E:ARG111
|
4.9
|
39.6
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 3udb
Go back to
Chlorine Binding Sites List in 3udb
Chlorine binding site 6 out
of 6 in the Crystal Structure of SNRK2.6
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of SNRK2.6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl318
b:88.2
occ:1.00
|
NH2
|
F:ARG111
|
4.0
|
49.9
|
1.0
|
CA
|
F:SER113
|
4.3
|
42.8
|
1.0
|
CZ
|
F:ARG111
|
4.3
|
52.4
|
1.0
|
OE1
|
A:GLU22
|
4.4
|
79.4
|
1.0
|
N
|
F:SER113
|
4.4
|
49.4
|
1.0
|
O
|
F:PHE112
|
4.4
|
38.7
|
1.0
|
C
|
F:PHE112
|
4.5
|
43.2
|
1.0
|
CB
|
F:SER113
|
4.6
|
38.8
|
1.0
|
O
|
F:ARG111
|
4.7
|
47.8
|
1.0
|
NE
|
F:ARG111
|
4.7
|
53.7
|
1.0
|
NH1
|
F:ARG111
|
4.8
|
43.5
|
1.0
|
CD
|
A:GLU22
|
4.8
|
89.2
|
1.0
|
OE2
|
A:GLU22
|
4.9
|
91.7
|
1.0
|
|
Reference:
T.Xie,
R.Ren,
Y.Pang,
C.Yan.
Molecular Mechanism For the Inhibition of A Critical Component in the Arabidopsis Thaliana Abscisic Acid Signal Transduction Pathways, SNRK2.6, By the Protein Phosphatase ABI1 To Be Published.
Page generated: Sun Jul 21 06:02:16 2024
|