Atomistry » Chlorine » PDB 3unk-3uwd » 3uu5
Atomistry »
  Chlorine »
    PDB 3unk-3uwd »
      3uu5 »

Chlorine in PDB 3uu5: The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution

Protein crystallography data

The structure of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution, PDB code: 3uu5 was solved by L.Sauguet, H.Nury, P.J.Corringer, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.40 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 181.860, 132.980, 160.420, 90.00, 102.42, 90.00
R / Rfree (%) 20.4 / 21.8

Other elements in 3uu5:

The structure of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution (pdb code 3uu5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution, PDB code: 3uu5:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3uu5

Go back to Chlorine Binding Sites List in 3uu5
Chlorine binding site 1 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl322

b:69.5
occ:1.00
 O A:HOH332 3.0 80.7 1.0
N A:PHE78 3.3 63.9 1.0
NH1 A:ARG85 3.5 62.1 1.0
N A:ARG85 3.6 79.4 1.0
CD2 A:PHE78 3.7 74.8 1.0
CB A:PHE78 3.9 67.9 1.0
CG2 A:VAL81 3.9 64.6 1.0
CA A:ARG77 4.0 62.3 1.0
CG A:ARG85 4.0 77.5 1.0
CA A:ALA84 4.0 79.0 1.0
CA A:PHE78 4.1 64.6 1.0
C A:ARG77 4.1 66.3 1.0
CB A:ARG85 4.2 75.5 1.0
O A:PHE78 4.2 64.7 1.0
CB A:ARG77 4.3 60.5 1.0
CG A:PHE78 4.3 71.2 1.0
C A:ALA84 4.4 84.4 1.0
CB A:ALA84 4.4 79.5 1.0
CD A:ARG85 4.5 81.9 1.0
CA A:ARG85 4.5 78.7 1.0
CZ A:ARG85 4.6 84.1 1.0
C A:PHE78 4.7 65.3 1.0
CE2 A:PHE78 4.7 78.6 1.0
CG A:ARG77 4.8 68.1 1.0

Chlorine binding site 2 out of 5 in 3uu5

Go back to Chlorine Binding Sites List in 3uu5
Chlorine binding site 2 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl320

b:74.6
occ:1.00
 N B:PHE78 3.1 65.2 1.0
NH1 B:ARG85 3.4 72.5 1.0
CD2 B:PHE78 3.5 71.9 1.0
CB B:PHE78 3.7 67.1 1.0
N B:ARG85 3.7 79.0 1.0
CG2 B:VAL81 3.8 68.5 1.0
CA B:PHE78 3.9 64.8 1.0
CA B:ARG77 4.0 65.4 1.0
C B:ARG77 4.0 68.6 1.0
CG B:ARG85 4.0 74.5 1.0
CG B:PHE78 4.1 69.2 1.0
O B:PHE78 4.1 68.0 1.0
CB B:ARG85 4.1 73.3 1.0
CA B:ALA84 4.2 83.1 1.0
CB B:ARG77 4.3 62.8 1.0
CD B:ARG85 4.5 77.3 1.0
C B:ALA84 4.5 85.1 1.0
C B:PHE78 4.5 68.1 1.0
CA B:ARG85 4.6 77.5 1.0
CE2 B:PHE78 4.6 75.1 1.0
CZ B:ARG85 4.6 84.8 1.0
CB B:ALA84 4.6 84.0 1.0
CG B:ARG77 4.9 73.1 1.0
CG1 B:VAL81 4.9 68.3 1.0
CB B:VAL81 5.0 68.7 1.0
NE B:ARG85 5.0 78.8 1.0

Chlorine binding site 3 out of 5 in 3uu5

Go back to Chlorine Binding Sites List in 3uu5
Chlorine binding site 3 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl321

b:73.0
occ:1.00
 N C:PHE78 3.3 67.3 1.0
NH1 C:ARG85 3.5 68.0 1.0
CD2 C:PHE78 3.6 75.5 1.0
N C:ARG85 3.7 83.0 1.0
CB C:PHE78 3.8 69.6 1.0
CG2 C:VAL81 3.9 71.9 1.0
CG C:ARG85 4.0 80.6 1.0
CA C:ARG77 4.0 67.2 1.0
CA C:ALA84 4.1 83.7 1.0
CA C:PHE78 4.1 67.2 1.0
C C:ARG77 4.1 70.6 1.0
CB C:ARG85 4.1 79.3 1.0
O C:PHE78 4.2 71.8 1.0
CG C:PHE78 4.2 72.4 1.0
CB C:ARG77 4.2 65.5 1.0
C C:ALA84 4.4 87.6 1.0
CB C:ALA84 4.5 84.3 1.0
CD C:ARG85 4.5 83.6 1.0
CA C:ARG85 4.5 82.0 1.0
CZ C:ARG85 4.6 87.1 1.0
C C:PHE78 4.7 70.3 1.0
CE2 C:PHE78 4.7 78.9 1.0
CG C:ARG77 4.8 73.8 1.0
NE C:ARG85 5.0 83.0 1.0

Chlorine binding site 4 out of 5 in 3uu5

Go back to Chlorine Binding Sites List in 3uu5
Chlorine binding site 4 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl321

b:71.0
occ:1.00
 O D:HOH338 2.9 83.2 1.0
N D:PHE78 3.2 59.5 1.0
NH1 D:ARG85 3.2 68.8 1.0
CD2 D:PHE78 3.4 66.4 1.0
N D:ARG85 3.6 81.7 1.0
CB D:PHE78 3.8 61.5 1.0
CG D:ARG85 3.8 77.5 1.0
CA D:ARG77 4.0 59.6 1.0
CB D:ARG85 4.0 77.6 1.0
CA D:PHE78 4.0 59.1 1.0
CG2 D:VAL81 4.0 68.7 1.0
C D:ARG77 4.0 63.6 1.0
CG D:PHE78 4.1 63.9 1.0
CA D:ALA84 4.2 84.6 1.0
CD D:ARG85 4.3 81.8 1.0
O D:PHE78 4.3 61.6 1.0
CB D:ARG77 4.3 58.5 1.0
CZ D:ARG85 4.4 90.8 1.0
C D:ALA84 4.4 87.2 1.0
CA D:ARG85 4.4 80.9 1.0
CE2 D:PHE78 4.5 69.2 1.0
CB D:ALA84 4.6 85.3 1.0
C D:PHE78 4.7 61.8 1.0
NE D:ARG85 4.8 86.6 1.0
CG D:ARG77 4.9 65.4 1.0

Chlorine binding site 5 out of 5 in 3uu5

Go back to Chlorine Binding Sites List in 3uu5
Chlorine binding site 5 out of 5 in the The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Glic Pentameric Ligand-Gated Ion Channel LOOP2-20' Mutant Reduced in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl320

b:77.6
occ:1.00
 N E:PHE78 3.1 67.3 1.0
NH1 E:ARG85 3.5 78.7 1.0
CD2 E:PHE78 3.6 76.8 1.0
CB E:PHE78 3.7 70.6 1.0
N E:ARG85 3.8 89.0 1.0
CA E:ARG77 3.9 68.2 1.0
CG2 E:VAL81 3.9 71.3 1.0
CA E:PHE78 3.9 67.8 1.0
C E:ARG77 3.9 70.7 1.0
O E:PHE78 4.0 70.9 1.0
CB E:ARG77 4.1 67.9 1.0
CG E:PHE78 4.1 73.6 1.0
CG E:ARG85 4.2 90.3 1.0
CA E:ALA84 4.2 89.8 1.0
CB E:ARG85 4.3 85.7 1.0
C E:PHE78 4.5 70.0 1.0
CB E:ALA84 4.6 90.6 1.0
C E:ALA84 4.6 93.9 1.0
CD E:ARG85 4.6 89.0 1.0
CZ E:ARG85 4.6 89.0 1.0
CE2 E:PHE78 4.7 80.0 1.0
CA E:ARG85 4.7 87.9 1.0
CG E:ARG77 4.7 77.8 1.0

Reference:

M.S.Prevost, L.Sauguet, H.Nury, C.Van Renterghem, C.Huon, F.Poitevin, M.Baaden, M.Delarue, P.J.Corringer. A Locally Closed Conformation of A Bacterial Pentameric Proton-Gated Ion Channel. Nat.Struct.Mol.Biol. V. 19 642 2012.
ISSN: ISSN 1545-9993
PubMed: 22580559
DOI: 10.1038/NSMB.2307
Page generated: Sun Jul 21 06:29:36 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy