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Chlorine in PDB 3v72: Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna

Enzymatic activity of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna

All present enzymatic activity of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna, PDB code: 3v72 was solved by C.L.Gridley, J.Jaeger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.76 / 2.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.193, 73.763, 118.367, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 29.1

Other elements in 3v72:

The structure of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna (pdb code 3v72). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna, PDB code: 3v72:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3v72

Go back to Chlorine Binding Sites List in 3v72
Chlorine binding site 1 out of 2 in the Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:87.3
occ:1.00
O A:HOH514 2.6 34.2 1.0
O A:LYS131 5.0 38.0 1.0

Chlorine binding site 2 out of 2 in 3v72

Go back to Chlorine Binding Sites List in 3v72
Chlorine binding site 2 out of 2 in the Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rat Dna Polymerase Beta Mutator E295K: Enzyme- Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:89.0
occ:1.00
ND1 A:HIS34 2.5 50.0 1.0
ND2 A:ASN37 3.1 39.0 1.0
CE1 A:HIS34 3.3 42.8 1.0
CG A:HIS34 3.5 47.3 1.0
CA A:HIS34 3.7 51.2 1.0
CB A:ASN37 3.8 43.7 1.0
CB A:HIS34 3.9 54.8 1.0
CG A:ASN37 3.9 40.5 1.0
NE2 A:HIS34 4.5 43.7 1.0
O A:HIS34 4.5 32.6 1.0
O A:ILE33 4.6 42.4 1.0
N A:HIS34 4.6 49.4 1.0
CD2 A:HIS34 4.6 38.9 1.0
C A:HIS34 4.6 36.2 1.0
C A:ILE33 4.9 43.7 1.0

Reference:

Y.Li, C.L.Gridley, J.Jaeger, J.B.Sweasy, T.Schlick. Unfavorable Electrostatic and Steric Interactions in Dna Polymerase Beta E295K Mutant Interfere with the Enzyme S Pathway J.Am.Chem.Soc. V. 134 9999 2012.
ISSN: ISSN 0002-7863
PubMed: 22651551
DOI: 10.1021/JA300361R
Page generated: Sat Dec 12 10:16:52 2020

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