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Chlorine in PDB 3vih: Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol

Enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol

All present enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol, PDB code: 3vih was solved by W.Y.Jeng, C.I.Liu, A.H.J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.00 / 1.03
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.155, 68.526, 75.469, 90.00, 95.58, 90.00
R / Rfree (%) 14.8 / 16.8

Other elements in 3vih:

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol (pdb code 3vih). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol, PDB code: 3vih:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3vih

Go back to Chlorine Binding Sites List in 3vih
Chlorine binding site 1 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:20.3
occ:0.50
O A:HOH1089 2.9 45.1 1.0
O A:HOH741 3.1 13.9 1.0
O A:HOH1035 3.6 26.3 1.0
CB A:ARG495 4.1 14.4 1.0
CD A:ARG495 4.3 15.3 1.0
N A:ARG495 4.6 13.1 1.0
OE2 A:GLU494 4.6 14.2 1.0
CG A:ARG495 4.7 14.4 1.0
CA A:ARG495 4.8 13.7 1.0

Chlorine binding site 2 out of 2 in 3vih

Go back to Chlorine Binding Sites List in 3vih
Chlorine binding site 2 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:29.8
occ:0.50
N A:ASN262 3.3 18.5 1.0
CB A:ASN262 3.9 22.5 1.0
CB A:THR261 4.0 15.8 1.0
CA A:THR261 4.1 15.4 1.0
CA A:ASN262 4.2 20.2 1.0
C A:THR261 4.2 15.9 1.0
OG1 A:THR261 4.9 16.6 1.0
CG2 A:THR261 4.9 17.1 1.0
O A:HOH1125 4.9 36.4 1.0

Reference:

W.Y.Jeng, N.C.Wang, C.T.Lin, W.J.Chang, C.I.Liu, A.H.J.Wang. High-Resolution Structures of Neotermes Koshunensis Beta-Glucosidase Mutants Provide Insights Into the Catalytic Mechanism and the Synthesis of Glucoconjugates Acta Crystallogr.,Sect.D V. 68 829 2012.
ISSN: ISSN 0907-4449
PubMed: 22751668
DOI: 10.1107/S0907444912013224
Page generated: Sat Dec 12 10:17:32 2020

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