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Chlorine in PDB 3vil: Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin

Enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin

All present enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin, PDB code: 3vil was solved by W.Y.Jeng, C.I.Liu, A.H.J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.20 / 1.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.908, 68.536, 75.663, 90.00, 95.70, 90.00
R / Rfree (%) 12.8 / 15.4

Other elements in 3vil:

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin (pdb code 3vil). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin, PDB code: 3vil:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3vil

Go back to Chlorine Binding Sites List in 3vil
Chlorine binding site 1 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:22.8
occ:0.50
O A:HOH1218 2.7 40.0 1.0
O A:HOH665 3.1 17.5 1.0
O A:HOH773 3.6 28.1 1.0
CB A:ARG495 4.1 17.1 1.0
CD A:ARG495 4.3 17.8 1.0
N A:ARG495 4.6 15.8 1.0
OE2 A:GLU494 4.6 17.7 1.0
CG A:ARG495 4.7 16.9 1.0
CA A:ARG495 4.8 16.9 1.0

Chlorine binding site 2 out of 2 in 3vil

Go back to Chlorine Binding Sites List in 3vil
Chlorine binding site 2 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with Salicin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl512

b:39.8
occ:0.50
N A:ASN262 3.3 19.7 1.0
O A:HOH1044 3.3 44.5 1.0
CB A:ASN262 3.8 24.8 1.0
CB A:THR261 3.8 17.9 1.0
CA A:THR261 4.1 16.7 1.0
CA A:ASN262 4.1 21.4 1.0
C A:THR261 4.1 17.4 1.0
OG1 A:THR261 4.7 18.3 1.0
CG2 A:THR261 4.7 19.9 1.0
O A:HOH1007 4.8 42.0 1.0
C A:ASN262 4.9 20.7 1.0

Reference:

W.Y.Jeng, N.C.Wang, C.T.Lin, W.J.Chang, C.I.Liu, A.H.J.Wang. High-Resolution Structures of Neotermes Koshunensis Beta-Glucosidase Mutants Provide Insights Into the Catalytic Mechanism and the Synthesis of Glucoconjugates Acta Crystallogr.,Sect.D V. 68 829 2012.
ISSN: ISSN 0907-4449
PubMed: 22751668
DOI: 10.1107/S0907444912013224
Page generated: Sat Dec 12 10:17:33 2020

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