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Chlorine in PDB 3vl3: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa, PDB code: 3vl3 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.09 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.824, 57.877, 75.671, 90.00, 119.02, 90.00
R / Rfree (%) 15.7 / 20.2

Other elements in 3vl3:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa (pdb code 3vl3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa, PDB code: 3vl3:

Chlorine binding site 1 out of 1 in 3vl3

Go back to Chlorine Binding Sites List in 3vl3
Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 340 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:11.9
occ:1.00
 O A:HOH600 2.9 25.9 1.0
N A:LEU246 3.2 11.6 1.0
N A:ILE142 3.3 9.8 1.0
CA A:GLY141 3.6 7.5 1.0
O A:HOH625 3.6 31.7 1.0
N A:ASN245 3.7 9.8 1.0
CG2 A:ILE142 3.7 8.6 1.0
CB A:LEU246 3.7 10.5 1.0
CB A:ASN245 3.7 10.2 1.0
CE A:MET163 3.8 17.1 1.0
C A:GLY141 4.0 9.4 1.0
CB A:SER244 4.0 11.5 1.0
CA A:ASN245 4.0 8.4 1.0
CG A:MET163 4.1 7.3 1.0
CA A:LEU246 4.1 11.4 1.0
CE2 A:TYR165 4.1 14.2 1.0
CB A:ILE142 4.1 10.7 1.0
C A:ASN245 4.1 10.8 1.0
OG A:SER244 4.1 14.6 1.0
OH A:TYR165 4.2 9.0 1.0
CA A:ILE142 4.3 9.9 1.0
SD A:MET163 4.4 14.5 1.0
C A:SER244 4.5 10.2 1.0
CZ A:TYR165 4.6 12.7 1.0
N A:GLY141 4.7 6.0 1.0
O A:GLY140 4.8 10.3 1.0
CA A:SER244 4.9 9.2 1.0
N A:TYR143 5.0 10.9 1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862
Page generated: Fri Jul 11 11:45:03 2025

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