Atomistry » Chlorine » PDB 3vfc-3vm5 » 3vl4
Atomistry »
  Chlorine »
    PDB 3vfc-3vm5 »
      3vl4 »

Chlorine in PDB 3vl4: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa, PDB code: 3vl4 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.63 / 1.88
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.610, 57.633, 75.504, 90.00, 118.98, 90.00
R / Rfree (%) 15.6 / 21.3

Other elements in 3vl4:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa (pdb code 3vl4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa, PDB code: 3vl4:

Chlorine binding site 1 out of 1 in 3vl4

Go back to Chlorine Binding Sites List in 3vl4
Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:10.6
occ:1.00
 O A:HOH695 3.0 34.8 1.0
N A:LEU246 3.2 9.1 1.0
N A:ILE142 3.3 9.1 1.0
CA A:GLY141 3.6 8.8 1.0
N A:ASN245 3.6 9.0 1.0
CB A:ASN245 3.7 9.1 1.0
O A:HOH577 3.7 26.4 1.0
CB A:LEU246 3.8 11.5 1.0
CE A:MET163 3.8 13.6 1.0
CG2 A:ILE142 3.8 9.8 1.0
C A:GLY141 4.0 9.7 1.0
CA A:ASN245 4.0 8.9 1.0
CE2 A:TYR165 4.0 9.0 1.0
CG A:MET163 4.0 8.7 1.0
C A:ASN245 4.1 9.2 1.0
CB A:SER244 4.1 8.4 1.0
CA A:LEU246 4.1 9.9 1.0
OG A:SER244 4.1 14.3 1.0
OH A:TYR165 4.1 9.5 1.0
CB A:ILE142 4.1 11.2 1.0
CA A:ILE142 4.3 8.9 1.0
SD A:MET163 4.4 14.0 1.0
C A:SER244 4.4 8.9 1.0
CZ A:TYR165 4.5 7.7 1.0
N A:GLY141 4.7 7.2 1.0
O A:GLY140 4.8 9.9 1.0
CA A:SER244 4.9 9.4 1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862
Page generated: Sun Jul 21 07:03:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy