Chlorine in PDB 3vl6: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa, PDB code: 3vl6 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.45 / 2.07
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	103.144, 57.380, 75.213, 90.00, 118.76, 90.00
*R / R_free (%)*	17.4 / 23.5

Other elements in 3vl6:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa (pdb code 3vl6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa, PDB code: 3vl6:

Chlorine binding site 1 out of 1 in 3vl6

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Chlorine Binding Sites List in 3vl6

Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 580 Mpa within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl403 b:10.2 occ:1.00	O	A:HOH660	3.0	33.5	1.0
	N	A:ILE142	3.1	8.8	1.0
	N	A:LEU246	3.3	7.2	1.0
	CA	A:GLY141	3.6	8.2	1.0
	O	A:HOH578	3.6	21.6	1.0
	N	A:ASN245	3.6	9.6	1.0
	CB	A:ASN245	3.7	8.5	1.0
	CG2	A:ILE142	3.8	9.2	1.0
	CB	A:LEU246	3.8	9.6	1.0
	C	A:GLY141	3.8	8.7	1.0
	CE	A:MET163	3.8	12.7	1.0
	CG	A:MET163	3.9	13.1	1.0
	OG	A:SER244	3.9	14.6	1.0
	CA	A:ASN245	4.0	8.4	1.0
	CE2	A:TYR165	4.1	11.0	1.0
	CB	A:ILE142	4.1	10.0	1.0
	OH	A:TYR165	4.1	5.6	1.0
	CB	A:SER244	4.1	9.5	1.0
	C	A:ASN245	4.1	8.4	1.0
	CA	A:LEU246	4.2	8.7	1.0
	CA	A:ILE142	4.2	9.8	1.0
	SD	A:MET163	4.3	14.9	1.0
	C	A:SER244	4.5	10.6	1.0
	CZ	A:TYR165	4.6	10.4	1.0
	N	A:GLY141	4.8	9.4	1.0
	O	A:GLY140	4.8	7.5	1.0
	N	A:TYR143	4.9	12.4	1.0
	CA	A:SER244	4.9	10.9	1.0
	CB	A:MET163	5.0	12.4	1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862

Page generated: Sun Jul 21 07:03:26 2024

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