Atomistry » Chlorine » PDB 3vm5-3vw8 » 3vml
Atomistry »
  Chlorine »
    PDB 3vm5-3vw8 »
      3vml »

Chlorine in PDB 3vml: Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O

Enzymatic activity of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O

All present enzymatic activity of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O:
1.1.1.85;

Protein crystallography data

The structure of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O, PDB code: 3vml was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.25 / 1.56
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.008, 107.523, 83.109, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.9

Other elements in 3vml:

The structure of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O (pdb code 3vml). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O, PDB code: 3vml:

Chlorine binding site 1 out of 1 in 3vml

Go back to Chlorine Binding Sites List in 3vml
Chlorine binding site 1 out of 1 in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:10.4
occ:1.00
O A:HOH964 3.1 22.9 1.0
N A:ILE142 3.3 9.8 1.0
N A:LEU246 3.3 8.8 1.0
O A:HOH591 3.5 22.1 1.0
CA A:GLY141 3.6 9.6 1.0
N A:ASN245 3.7 8.1 1.0
CB A:ASN245 3.8 8.4 1.0
CB A:LEU246 3.8 11.5 1.0
CG2 A:ILE142 3.8 12.5 1.0
CE A:MET163 3.8 13.4 1.0
C A:GLY141 3.9 11.6 1.0
CE1 A:TYR165 4.0 12.0 1.0
OG A:SER244 4.1 17.3 1.0
CA A:ASN245 4.1 9.6 1.0
C A:ASN245 4.1 7.9 1.0
CB A:SER244 4.1 13.4 1.0
CG A:MET163 4.1 9.3 1.0
OH A:TYR165 4.2 10.5 1.0
CB A:ILE142 4.2 10.2 1.0
CA A:LEU246 4.2 10.8 1.0
CA A:ILE142 4.3 10.9 1.0
SD A:MET163 4.4 12.2 1.0
CZ A:TYR165 4.6 11.8 1.0
C A:SER244 4.6 9.7 1.0
O A:GLY140 4.7 11.8 1.0
N A:GLY141 4.7 9.9 1.0
N A:TYR143 5.0 13.1 1.0
CA A:SER244 5.0 9.4 1.0

Reference:

Y.Hamajima, T.Nagae, N.Watanabe, C.Kato. Structure Analysis of Chimeric 3-Isopropylmalate Dehydrogenase Between the Obligate Piezophile Shewanella Benthica DB21MT-2 and the Nonpiezophile Shewanella Oneidensis Mr-1 To Be Published.
Page generated: Sun Jul 21 07:06:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy