Chlorine in PDB 3vto: The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike

The structure of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike, PDB code: 3vto was solved by K.Harada, E.Yamashita, A.Nakagawa, S.Takeda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.52 / 1.44
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.403, 152.399, 53.062, 90.00, 91.01, 90.00
R / Rfree (%)	16.2 / 19.5

The structure of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Calcium	(Ca)	2 atoms

The binding sites of Chlorine atom in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike (pdb code 3vto). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike, PDB code: 3vto:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl301 b:15.5 occ:1.00 N A:ASP188 3.3 15.3 1.0 N C:ASP188 3.3 13.8 1.0 N B:ASP188 3.3 14.8 1.0 CA C:GLY187 3.5 14.0 1.0 OD1 B:ASP188 3.5 14.0 1.0 CA B:GLY187 3.5 16.2 1.0 OD1 A:ASP188 3.5 14.4 1.0 OD1 C:ASP188 3.6 14.1 1.0 CA A:GLY187 3.6 14.9 1.0 CA A:CA302 3.8 13.6 1.0 CG A:ASP188 3.8 14.8 1.0 C C:GLY187 3.9 13.3 1.0 CG B:ASP188 3.9 14.1 1.0 C B:GLY187 3.9 15.3 1.0 C A:GLY187 4.0 15.1 1.0 CG C:ASP188 4.0 14.4 1.0 CG2 B:THR193 4.2 15.5 1.0 CG2 C:THR193 4.2 14.7 1.0 CG2 A:THR193 4.3 16.1 1.0 CB A:ASP188 4.3 15.8 1.0 CA A:ASP188 4.3 15.2 1.0 OD2 A:ASP188 4.4 15.7 1.0 CA B:ASP188 4.4 14.6 1.0 CA C:ASP188 4.4 13.8 1.0 CB B:ASP188 4.4 15.3 1.0 OD2 C:ASP188 4.5 14.4 1.0 CB C:ASP188 4.5 14.7 1.0 OD2 B:ASP188 4.5 16.8 1.0 N C:GLY187 4.8 14.3 1.0 N B:GLY187 4.9 14.9 1.0

Chlorine binding site 2 out of 2 in the The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike within 5.0Å range: probe atom residue distance (Å) B Occ P:Cl302 b:15.7 occ:1.00 N P:ASP188 3.2 14.8 1.0 N Q:ASP188 3.3 13.2 1.0 N R:ASP188 3.3 14.4 1.0 OD1 P:ASP188 3.4 14.5 1.0 CA Q:GLY187 3.5 13.8 1.0 OD1 R:ASP188 3.5 14.3 1.0 OD1 Q:ASP188 3.6 14.5 1.0 CA P:GLY187 3.6 15.8 1.0 CA R:GLY187 3.6 15.1 1.0 CA Q:CA301 3.8 14.3 1.0 CG P:ASP188 3.8 16.6 1.0 CG R:ASP188 3.9 13.8 1.0 C Q:GLY187 3.9 13.7 1.0 C P:GLY187 3.9 15.7 1.0 CG Q:ASP188 3.9 15.0 1.0 C R:GLY187 4.0 14.6 1.0 CG2 P:THR193 4.1 15.3 1.0 CG2 Q:THR193 4.2 15.8 1.0 CG2 R:THR193 4.2 15.0 1.0 CA P:ASP188 4.3 15.2 1.0 CB P:ASP188 4.3 15.6 1.0 CA R:ASP188 4.4 14.8 1.0 CB R:ASP188 4.4 14.3 1.0 OD2 R:ASP188 4.4 16.2 1.0 CA Q:ASP188 4.4 13.1 1.0 OD2 Q:ASP188 4.4 16.2 1.0 OD2 P:ASP188 4.5 15.2 1.0 CB Q:ASP188 4.5 15.2 1.0 N Q:GLY187 4.8 13.7 1.0 N P:GLY187 5.0 14.5 1.0

K.Harada, E.Yamashita, A.Nakagawa, T.Miyafusa, K.Tsumoto, T.Ueno, Y.Toyama, S.Takeda. Crystal Structure of the C-Terminal Domain of Mu Phage Central Spike and Functions of Bound Calcium Ion Biochim.Biophys.Acta V.1834 284 2013.
ISSN: ISSN 0006-3002
PubMed: 22922659
DOI: 10.1016/J.BBAPAP.2012.08.015