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Chlorine in PDB 3vu1: Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii

Enzymatic activity of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii

All present enzymatic activity of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii:
2.4.1.119;

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii, PDB code: 3vu1 was solved by J.Nyirenda, S.Matsumoto, T.Saitoh, N.Maita, N.N.Noda, F.Inagaki, D.Kohda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.467, 94.844, 186.345, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.5

Other elements in 3vu1:

The structure of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii (pdb code 3vu1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii, PDB code: 3vu1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3vu1

Go back to Chlorine Binding Sites List in 3vu1
Chlorine binding site 1 out of 2 in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:41.9
occ:1.00
 NH1 A:ARG872 3.2 34.9 1.0
NH2 A:ARG768 3.2 27.4 1.0
CZ A:PHE901 3.9 59.5 1.0
CD A:ARG872 3.9 39.5 1.0
CB A:SER561 4.0 37.7 1.0
NH1 A:ARG768 4.0 32.1 1.0
CA A:SER561 4.1 37.6 1.0
CZ A:ARG768 4.1 32.1 1.0
CG A:PRO826 4.2 35.0 1.0
CZ A:ARG872 4.3 35.5 1.0
CD A:PRO826 4.3 34.4 1.0
CE2 A:PHE901 4.5 58.1 1.0
NE A:ARG872 4.5 39.1 1.0
CG1 A:VAL954 4.6 42.0 1.0
CE1 A:PHE901 4.7 62.5 1.0
CB A:PRO826 4.7 34.1 1.0
CD1 A:ILE956 4.7 36.8 1.0
O A:SER561 4.9 38.2 1.0

Chlorine binding site 2 out of 2 in 3vu1

Go back to Chlorine Binding Sites List in 3vu1
Chlorine binding site 2 out of 2 in the Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase (Phaglb-L, O74088_PYRHO) From Pyrococcus Horikoshii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:53.1
occ:1.00
 NH2 B:ARG768 3.3 26.5 1.0
NH1 B:ARG872 3.4 36.4 1.0
CD B:ARG872 3.8 37.2 1.0
CZ B:PHE901 4.1 57.3 1.0
CB B:SER561 4.1 32.6 1.0
CG B:PRO826 4.2 45.0 1.0
NH1 B:ARG768 4.2 30.8 1.0
CZ B:ARG768 4.2 30.6 1.0
CE2 B:PHE901 4.2 56.2 1.0
CD B:PRO826 4.4 45.3 1.0
CA B:SER561 4.4 33.7 1.0
CZ B:ARG872 4.4 35.6 1.0
CG2 B:THR899 4.5 52.6 1.0
CB B:PRO826 4.5 41.9 1.0
CD1 B:ILE956 4.6 46.5 1.0
NE B:ARG872 4.6 36.0 1.0
CG1 B:VAL954 4.8 52.8 1.0

Reference:

J.Nyirenda, S.Matsumoto, T.Saitoh, N.Maita, N.N.Noda, F.Inagaki, D.Kohda. Crystallographic and uc(Nmr) Evidence For Flexibility in Oligosaccharyltransferases and Its Catalytic Significance Structure V. 21 32 2013.
ISSN: ISSN 0969-2126
PubMed: 23177926
DOI: 10.1016/J.STR.2012.10.011
Page generated: Sun Jul 21 07:11:46 2024

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