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Chlorine in PDB 3vuu: Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum

Protein crystallography data

The structure of Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum, PDB code: 3vuu was solved by P.E.Czabotar, A.N.Hodder, O.B.Clarke, C.S.Lin, B.J.Smith, A.F.Cowman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.58 / 2.09
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.625, 101.499, 38.365, 90.00, 101.59, 90.00
R / Rfree (%) 18.3 / 23.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum (pdb code 3vuu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum, PDB code: 3vuu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3vuu

Go back to Chlorine Binding Sites List in 3vuu
Chlorine binding site 1 out of 2 in the Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:65.6
occ:1.00
CA A:TYR400 3.9 50.5 1.0
N A:TYR400 3.9 54.8 1.0
CG A:ASN364 4.0 50.1 1.0
CB A:TYR400 4.1 50.2 1.0
CB A:ASN364 4.1 44.0 1.0
OD1 A:ASN364 4.2 51.8 1.0
C A:LYS399 4.2 57.0 1.0
O A:THR396 4.3 56.5 1.0
ND2 A:ASN364 4.3 49.5 1.0
CB A:LYS399 4.3 61.4 1.0
O A:LYS399 4.4 51.5 1.0
CD1 A:TYR400 4.5 47.6 1.0
CA A:ASN364 4.6 46.4 1.0
CG2 A:THR396 4.7 58.4 1.0
O A:ASN364 4.7 43.4 1.0
CG A:TYR400 4.8 50.1 1.0
CA A:LYS399 4.9 59.2 1.0

Chlorine binding site 2 out of 2 in 3vuu

Go back to Chlorine Binding Sites List in 3vuu
Chlorine binding site 2 out of 2 in the Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Merozoite Surface Protein MSPDBL2 From P. Falciparum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:86.5
occ:1.00
CD1 A:LEU347 3.9 40.3 1.0
CD1 A:TYR425 4.0 52.4 1.0
OD1 A:ASP427 4.1 94.4 1.0
CD A:PRO344 4.1 30.4 1.0
CG A:TYR425 4.3 60.5 1.0
CG A:PRO344 4.4 35.5 1.0
CB A:TYR425 4.5 57.8 1.0
CE1 A:TYR425 4.6 55.8 1.0
CD1 A:ILE428 4.9 51.6 1.0
CG2 A:ILE428 5.0 52.6 1.0

Reference:

A.N.Hodder, P.E.Czabotar, A.D.Uboldi, O.B.Clarke, C.S.Lin, J.Healer, B.J.Smith, A.F.Cowman. Insights Into Duffy Binding-Like Domains Through the Crystal Structure and Function of the Merozoite Surface Protein MSPDBL2 From Plasmodium Falciparum J.Biol.Chem. V. 287 32922 2012.
ISSN: ISSN 0021-9258
PubMed: 22843685
DOI: 10.1074/JBC.M112.350504
Page generated: Sat Dec 12 10:18:23 2020

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