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Chlorine in PDB 3vwd: Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form)

Enzymatic activity of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form)

All present enzymatic activity of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form):
2.3.1.108;

Protein crystallography data

The structure of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form), PDB code: 3vwd was solved by S.Yuzawa, H.Sumimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.81 / 1.25
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 45.175, 117.464, 37.380, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 17

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form) (pdb code 3vwd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form), PDB code: 3vwd:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3vwd

Go back to Chlorine Binding Sites List in 3vwd
Chlorine binding site 1 out of 3 in the Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:4.5
occ:0.54
 NE2 A:GLN131 3.2 5.0 1.0
NZ A:LYS162 3.3 5.8 1.0
OE2 A:GLU128 3.6 7.5 1.0
CB A:ALA57 3.6 6.2 1.0
CG A:GLU128 3.6 7.0 1.0
C7P A:ACO201 3.7 5.4 1.0
O A:HOH303 3.7 5.5 1.0
OE1 A:GLN131 3.9 5.8 1.0
CD A:GLU128 3.9 6.0 1.0
CD A:GLN131 4.0 5.0 1.0
CA A:ALA57 4.1 5.5 1.0
O A:ALA57 4.2 6.1 1.0
N8P A:ACO201 4.5 5.3 1.0
C A:ALA57 4.5 5.8 1.0
CE A:LYS162 4.6 6.0 1.0
C6P A:ACO201 4.8 5.8 1.0
OE1 A:GLU128 4.9 6.6 1.0
CB A:GLU128 4.9 7.2 1.0

Chlorine binding site 2 out of 3 in 3vwd

Go back to Chlorine Binding Sites List in 3vwd
Chlorine binding site 2 out of 3 in the Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:7.2
occ:0.58
 NZ A:LYS98 3.2 6.8 1.0
ND1 A:HIS75 3.5 11.8 1.0
CB A:ARG69 3.5 11.2 1.0
N A:MET70 3.5 8.2 1.0
CD A:LYS98 3.7 5.6 1.0
CG A:MET70 3.7 8.9 1.0
C A:ARG69 3.7 9.4 1.0
SD A:MET70 3.7 8.9 1.0
CA A:THR65 3.7 5.8 1.0
N A:SER66 3.8 6.7 1.0
O A:SER66 3.8 7.4 1.0
CE A:LYS98 3.9 6.0 1.0
O A:ILE64 3.9 7.9 1.0
CA A:MET70 3.9 8.8 1.0
CG2 A:THR65 4.1 8.7 1.0
O A:ARG69 4.2 10.9 1.0
CA A:ARG69 4.2 10.3 1.0
CE1 A:HIS75 4.2 12.9 1.0
C A:THR65 4.3 6.7 1.0
CB A:THR65 4.3 7.0 1.0
CB A:MET70 4.4 8.1 1.0
NE A:ARG69 4.4 17.9 1.0
OG1 A:THR65 4.4 6.6 1.0
CG A:HIS75 4.6 10.7 1.0
N A:THR65 4.7 5.5 1.0
C A:ILE64 4.7 6.3 1.0
CG A:ARG69 4.8 13.0 1.0
C A:SER66 4.8 7.4 1.0
CB A:HIS75 4.8 8.7 1.0
CA A:SER66 4.9 7.3 1.0
CD A:ARG69 4.9 15.3 1.0

Chlorine binding site 3 out of 3 in 3vwd

Go back to Chlorine Binding Sites List in 3vwd
Chlorine binding site 3 out of 3 in the Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 in Complex with Acetoacetyl-Coa (P21212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:10.3
occ:0.51
 O A:HOH511 3.3 22.5 1.0
N A:GLY188 3.3 8.9 1.0
N A:PHE190 3.3 5.6 1.0
O A:HOH374 3.4 18.6 1.0
N A:PHE189 3.6 5.7 1.0
CB A:PHE190 3.7 8.2 1.0
CD2 A:PHE190 3.9 9.0 1.0
C A:GLY188 4.0 6.5 1.0
CA A:GLY188 4.0 8.4 1.0
CA A:PHE190 4.1 6.4 1.0
CA A:GLU187 4.1 9.2 1.0
C A:GLU187 4.2 9.1 1.0
O A:PHE186 4.2 6.5 1.0
CA A:PHE189 4.3 5.6 1.0
CG A:PHE190 4.3 8.7 1.0
C A:PHE189 4.3 6.2 1.0
CB A:PHE189 4.4 5.7 1.0
CG2 A:VAL177 4.4 13.9 1.0
C A:PHE190 4.7 6.6 1.0
N A:ALA191 4.8 6.3 1.0
O A:GLY188 4.8 7.1 1.0
N A:GLU187 5.0 7.8 1.0
C A:PHE186 5.0 6.2 1.0
CE1 A:HIS194 5.0 22.6 1.0

Reference:

S.Yuzawa, H.Sumimoto. Crystal Structure of Alpha-Tubulin Acetyltransferase Domain of Human Mec-17 To Be Published.
Page generated: Sun Jul 21 07:14:38 2024

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