Chlorine in PDB 3vzf: Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside

The structure of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside, PDB code: 3vzf was solved by M.Kanagawa, Y.Yamaguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.50 / 2.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.192, 73.045, 30.460, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 28.5

The binding sites of Chlorine atom in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside (pdb code 3vzf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside, PDB code: 3vzf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:42.9 occ:1.00 N A:TYR117 3.5 32.5 1.0 O A:TYR117 3.9 32.9 1.0 CA A:ARG116 4.1 32.2 1.0 CA A:TYR117 4.3 32.7 1.0 C A:ARG116 4.3 32.3 1.0 CB A:ARG116 4.4 32.1 1.0 C A:TYR117 4.4 32.8 1.0 CB A:TYR117 4.5 32.9 1.0 CG A:ARG116 4.7 32.1 1.0 CD2 A:TYR117 4.9 33.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Methyl Alpha-D-Mannopyranoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:33.5 occ:1.00 OG A:SER127 3.2 29.2 1.0 CB A:SER127 3.6 29.1 1.0 C A:PHE128 3.7 27.2 1.0 N A:PHE128 3.8 28.1 1.0 C A:SER127 3.9 28.7 1.0 CA A:PHE128 3.9 27.6 1.0 N A:ASN129 3.9 26.9 1.0 O A:PHE128 4.0 27.2 1.0 CB A:ASN129 4.0 26.4 1.0 O A:SER127 4.1 28.6 1.0 CA A:SER127 4.4 29.1 1.0 O A:HOH321 4.5 27.3 1.0 CA A:ASN129 4.5 26.6 1.0 O A:HOH307 4.8 19.3 1.0 ND2 A:ASN129 5.0 26.1 1.0

M.Kanagawa, Y.Liu, S.Hanashima, A.Ikeda, W.Chai, Y.Nakano, K.Kojima-Aikawa, T.Feizi, Y.Yamaguchi. Structural Basis For Multiple Sugar Recognition of Jacalin-Related Human ZG16P Lectin J.Biol.Chem. V. 289 16954 2014.
ISSN: ISSN 0021-9258
PubMed: 24790092
DOI: 10.1074/JBC.M113.539114