Atomistry » Chlorine » PDB 3vwd-3w8f » 3w6a
Atomistry »
  Chlorine »
    PDB 3vwd-3w8f »
      3w6a »

Chlorine in PDB 3w6a: Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2

Enzymatic activity of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2

All present enzymatic activity of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2, PDB code: 3w6a was solved by H.Tabe, S.Abe, T.Hikage, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 1.77
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.046, 79.046, 36.358, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 27.2

Other elements in 3w6a:

The structure of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 also contains other interesting chemical elements:

Ruthenium (Ru) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 (pdb code 3w6a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2, PDB code: 3w6a:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 1 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:29.0
occ:1.00
 OH A:TYR23 3.0 24.0 1.0
CE2 A:TYR23 3.7 25.0 1.0
CZ A:TYR23 3.7 24.6 1.0
CA A:GLY104 4.1 24.6 1.0
O A:ARG21 4.6 28.4 1.0
N A:GLY104 4.7 23.1 1.0
CE1 A:TYR23 4.9 21.9 1.0
CD2 A:TYR23 4.9 23.3 1.0

Chlorine binding site 2 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 2 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:30.5
occ:1.00
 O A:HOH333 3.1 26.3 1.0
N A:THR69 3.2 25.5 1.0
O A:THR69 3.4 24.5 1.0
OG A:SER72 3.5 27.9 1.0
N A:ARG68 3.5 27.7 1.0
C A:GLY67 3.6 30.3 1.0
N A:GLY67 3.6 27.2 1.0
CA A:GLY67 3.6 27.9 1.0
OD1 A:ASN65 3.7 30.2 1.0
C A:THR69 3.8 26.3 1.0
CA A:THR69 3.9 24.1 1.0
O A:HOH332 4.0 28.4 1.0
C A:ARG68 4.1 26.2 1.0
CB A:THR69 4.2 27.2 1.0
OD1 A:ASP66 4.2 23.0 1.0
O A:GLY67 4.3 31.6 1.0
CA A:ARG68 4.3 28.5 1.0
C A:ASP66 4.6 26.5 1.0
N A:PRO70 4.7 29.0 1.0
NA A:NA205 4.7 29.8 1.0
OG1 A:THR69 4.7 25.8 1.0
CB A:SER72 4.8 29.1 1.0
N A:ASP66 4.8 23.8 1.0
CG A:ASN65 4.9 26.5 1.0

Chlorine binding site 3 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 3 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:44.1
occ:1.00
 O A:HOH319 2.9 31.1 1.0
NE A:ARG114 3.0 24.9 1.0
NH2 A:ARG114 3.4 26.1 1.0
CZ A:ARG114 3.7 25.1 1.0
CB A:ARG114 3.9 23.9 1.0
CG A:ARG114 3.9 27.7 1.0
CZ A:PHE34 3.9 28.3 1.0
CD A:ARG114 4.1 25.0 1.0
CE2 A:PHE34 4.2 26.2 1.0
CE1 A:PHE34 4.3 27.6 1.0
O A:ARG114 4.4 26.6 1.0
CA A:ARG114 4.4 26.0 1.0
O A:HOH318 4.8 35.3 1.0
CD2 A:PHE34 4.9 25.3 1.0
C A:ARG114 4.9 27.2 1.0
CD1 A:PHE34 4.9 23.6 1.0
NH1 A:ARG114 5.0 27.2 1.0

Chlorine binding site 4 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 4 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:40.4
occ:1.00
 O A:TYR53 2.8 20.5 1.0
OG A:SER91 2.9 25.4 1.0
N A:LEU56 2.9 22.5 1.0
N A:ILE55 3.3 23.6 1.0
C A:GLY54 3.4 21.7 1.0
CA A:GLY54 3.4 20.8 1.0
N A:GLN57 3.5 19.9 1.0
CB A:SER91 3.6 26.1 1.0
CA A:LEU56 3.6 23.2 1.0
C A:LEU56 3.7 21.4 1.0
CD1 A:ILE58 3.8 21.9 1.0
C A:TYR53 3.8 21.9 1.0
O A:HOH308 3.8 30.6 1.0
CG1 A:ILE58 3.8 22.4 1.0
CB A:LEU56 3.9 23.2 1.0
C A:ILE55 4.0 25.7 1.0
N A:ILE58 4.0 21.0 1.0
O A:GLY54 4.0 22.3 1.0
CA A:ILE55 4.1 24.6 1.0
N A:GLY54 4.1 20.1 1.0
CB A:ILE58 4.2 24.3 1.0
CG2 A:ILE55 4.2 31.1 1.0
O A:LEU83 4.3 26.5 1.0
CB A:LEU83 4.3 25.4 1.0
CD2 A:LEU83 4.4 30.4 1.0
CA A:SER91 4.5 24.7 1.0
O A:LEU56 4.6 21.3 1.0
CA A:GLN57 4.6 17.6 1.0
CB A:ILE55 4.7 29.2 1.0
CA A:ILE58 4.8 22.4 1.0
CG A:LEU56 4.8 24.6 1.0
C A:GLN57 4.8 20.3 1.0
CG A:LEU83 4.9 27.4 1.0
CD1 A:LEU83 4.9 24.9 1.0

Chlorine binding site 5 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 5 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:48.3
occ:0.60
 CL1 A:RBN207 0.0 48.3 0.6
RU1 A:RBN207 2.4 47.8 0.6
C1 A:RBN207 2.9 46.8 0.6
CL2 A:RBN207 3.0 55.7 0.6
C6 A:RBN207 3.3 48.3 0.6
NE2 A:HIS15 3.4 42.2 1.0
CD2 A:HIS15 3.4 39.3 1.0
C2 A:RBN207 3.5 49.9 0.6
CB A:ALA11 3.8 29.3 1.0
CA A:ALA11 3.8 29.3 1.0
O A:ALA11 4.1 30.9 1.0
C5 A:RBN207 4.1 50.5 0.6
CB A:ARG14 4.1 31.0 1.0
C3 A:RBN207 4.3 49.4 0.6
O A:HOH343 4.4 40.8 1.0
C A:ALA11 4.4 31.2 1.0
C4 A:RBN207 4.5 48.1 0.6
CE1 A:HIS15 4.7 45.4 1.0
CG A:HIS15 4.8 37.2 1.0
N A:ALA11 5.0 32.1 1.0

Chlorine binding site 6 out of 6 in 3w6a

Go back to Chlorine Binding Sites List in 3w6a
Chlorine binding site 6 out of 6 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:55.7
occ:0.60
 CL2 A:RBN207 0.0 55.7 0.6
RU1 A:RBN207 2.4 47.8 0.6
CL1 A:RBN207 3.0 48.3 0.6
C3 A:RBN207 3.2 49.4 0.6
C2 A:RBN207 3.3 49.9 0.6
C4 A:RBN207 3.8 48.1 0.6
NE2 A:HIS15 4.0 42.2 1.0
C1 A:RBN207 4.1 46.8 0.6
CB A:ARG14 4.2 31.0 1.0
CD2 A:HIS15 4.4 39.3 1.0
C5 A:RBN207 4.5 50.5 0.6
C6 A:RBN207 4.6 48.3 0.6
CE1 A:HIS15 4.8 45.4 1.0

Reference:

T.Ueno, H.Tabe, S.Abe, T.Hikage, S.Kitagawa. Solid Artificial Metalloenzymes: Post-Engineering of Porous Protein Crystals By Organometallic Complexes To Be Published.
Page generated: Sun Jul 21 07:22:08 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy