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Chlorine in PDB 3wbh: Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593

Enzymatic activity of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593

All present enzymatic activity of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593:
3.1.3.1;

Protein crystallography data

The structure of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593, PDB code: 3wbh was solved by S.Arai, Y.Yonezawa, M.Ishibashi, F.Matsumoto, T.Tamada, H.Tokunaga, M.Tokunaga, R.Kuroki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.29 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.713, 146.974, 58.280, 90.00, 105.21, 90.00
R / Rfree (%) 17.7 / 22.5

Other elements in 3wbh:

The structure of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593 also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593 (pdb code 3wbh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593, PDB code: 3wbh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3wbh

Go back to Chlorine Binding Sites List in 3wbh
Chlorine binding site 1 out of 2 in the Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:34.9
occ:1.00
ZN A:ZN504 2.5 35.9 1.0
OG A:SER65 2.6 11.6 1.0
O B:HOH633 3.0 22.1 1.0
O A:HOH636 3.1 14.5 1.0
NH2 A:ARG129 3.2 25.2 1.0
NH1 A:ARG129 3.3 23.4 1.0
CB A:SER65 3.3 11.6 1.0
O A:HOH629 3.3 12.9 1.0
OD2 A:ASP269 3.4 12.6 1.0
O A:HOH635 3.5 22.4 1.0
NE2 A:HIS461 3.5 9.7 1.0
CE1 A:HIS461 3.6 10.3 1.0
CZ A:ARG129 3.7 26.5 1.0
ZN A:ZN505 3.7 13.6 1.0
O A:HOH639 3.8 9.7 1.0
N A:SER65 4.0 11.4 1.0
CG A:ASP269 4.2 11.6 1.0
CA A:SER65 4.2 11.4 1.0
OD1 A:ASP269 4.4 12.0 1.0
NE2 A:HIS312 4.5 10.1 1.0
NE2 A:HIS273 4.5 10.7 1.0
OD1 A:ASP12 4.7 12.6 1.0
ND1 A:HIS461 4.9 10.5 1.0
CD2 A:HIS461 4.9 10.2 1.0
CE1 A:HIS312 5.0 9.7 1.0

Chlorine binding site 2 out of 2 in 3wbh

Go back to Chlorine Binding Sites List in 3wbh
Chlorine binding site 2 out of 2 in the Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Characteristics of Alkaline Phosphatase From A Moderately Halophilic Bacteria Halomonas Sp.593 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:29.1
occ:1.00
ZN B:ZN504 2.4 33.4 1.0
OG B:SER65 2.5 12.4 1.0
O B:HOH634 2.9 20.9 1.0
O A:HOH637 3.0 18.3 1.0
OD2 B:ASP269 3.1 15.8 1.0
CB B:SER65 3.2 11.9 1.0
O B:HOH610 3.3 11.5 1.0
NH1 B:ARG129 3.4 29.5 1.0
NH2 B:ARG129 3.5 31.0 1.0
NE2 B:HIS461 3.6 11.2 1.0
CE1 B:HIS461 3.6 11.3 1.0
ZN B:ZN505 3.7 13.2 1.0
CZ B:ARG129 3.9 31.9 1.0
O B:HOH638 3.9 7.8 1.0
N B:SER65 4.1 12.5 1.0
CG B:ASP269 4.1 14.3 1.0
CA B:SER65 4.3 11.8 1.0
NE2 B:HIS312 4.4 11.9 1.0
OD1 B:ASP269 4.5 15.3 1.0
NE2 B:HIS273 4.6 11.4 1.0
OD1 B:ASP12 4.6 9.9 1.0
ND1 B:HIS461 4.9 11.9 1.0
CD2 B:HIS461 4.9 10.9 1.0
CE1 B:HIS312 4.9 11.4 1.0

Reference:

S.Arai, Y.Yonezawa, M.Ishibashi, F.Matsumoto, M.Adachi, T.Tamada, H.Tokunaga, M.Blaber, M.Tokunaga, R.Kuroki. Structural Characteristics of Alkaline Phosphatase From the Moderately Halophilic Bacterium Halomonas Sp. 593. Acta Crystallogr.,Sect.D V. 70 811 2014.
ISSN: ISSN 0907-4449
DOI: 10.1107/S1399004713033609
Page generated: Sat Dec 12 10:19:09 2020

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