Chlorine in PDB 3wmp: Crystal Structure of Sll-2

The structure of Crystal Structure of Sll-2, PDB code: 3wmp was solved by A.Kita, M.Jimbo, R.Sakai, Y.Morimoto, R.Takeuchi, H.Tanaka, T.Takahashi, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	94.98 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.030, 189.950, 57.050, 90.00, 110.55, 90.00
R / Rfree (%)	25.1 / 27.1

The structure of Crystal Structure of Sll-2 also contains other interesting chemical elements:

Sodium

(Na)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Sll-2 (pdb code 3wmp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Sll-2, PDB code: 3wmp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl104 b:78.1 occ:1.00 NH2 A:ARG58 3.0 39.3 1.0 OG1 A:THR80 3.1 46.1 1.0 N A:ASN56 3.3 41.6 1.0 CB A:ASN55 3.6 44.5 1.0 OD1 A:ASN55 3.6 48.1 1.0 NH1 A:ARG58 3.7 42.1 1.0 CZ A:ARG58 3.8 38.6 1.0 CA A:ASN55 3.9 44.4 1.0 CG A:ASN56 4.0 41.0 1.0 CG A:ASN55 4.0 48.4 1.0 CB A:ASN56 4.1 40.4 1.0 C A:ASN55 4.1 43.7 1.0 OD1 A:ASN56 4.2 42.0 1.0 CA A:ASN56 4.3 40.5 1.0 ND2 A:ASN56 4.4 41.6 1.0 CB A:THR80 4.5 47.4 1.0 CD2 A:TYR79 4.7 54.8 1.0

Chlorine binding site 2 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl105 b:69.5 occ:1.00 NH2 A:ARG16 3.0 67.3 1.0 N2 C:NAG102 3.1 48.3 1.0 NE A:ARG16 3.2 65.1 1.0 CZ A:ARG16 3.5 67.7 1.0 C3 C:NAG102 3.7 55.0 1.0 C2 C:NAG102 3.9 51.3 1.0 CE A:MET48 4.0 36.2 1.0 C8 C:NAG102 4.0 44.8 1.0 O3 C:NAG102 4.0 52.0 1.0 C7 C:NAG102 4.0 47.0 1.0 CG2 A:THR14 4.1 45.5 1.0 C1 C:NAG102 4.4 50.6 1.0 CD A:ARG16 4.4 60.3 1.0 CG A:ARG16 4.7 57.5 1.0 OD1 C:ASN60 4.8 46.4 1.0 NH1 A:ARG16 4.8 69.9 1.0

Chlorine binding site 3 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl103 b:53.9 occ:1.00 N B:ASN56 3.1 39.8 1.0 NH2 B:ARG58 3.2 38.4 1.0 OG1 B:THR80 3.3 47.6 1.0 OD1 B:ASN55 3.6 45.2 1.0 CG B:ASN56 3.6 41.2 1.0 NH1 B:ARG58 3.6 38.3 1.0 CB B:ASN55 3.7 41.6 1.0 CB B:ASN56 3.7 40.2 1.0 CA B:ASN55 3.8 40.4 1.0 CZ B:ARG58 3.9 37.6 1.0 OD1 B:ASN56 3.9 41.3 1.0 C B:ASN55 3.9 40.2 1.0 CA B:ASN56 4.0 39.5 1.0 ND2 B:ASN56 4.0 40.1 1.0 CG B:ASN55 4.1 43.8 1.0 CB B:THR80 4.6 46.5 1.0 CD2 B:TYR79 4.9 56.6 1.0

Chlorine binding site 4 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl104 b:55.2 occ:1.00 NH2 B:ARG16 3.0 64.4 1.0 N2 A:NAG101 3.1 47.2 1.0 NE B:ARG16 3.3 61.3 1.0 CZ B:ARG16 3.6 64.2 1.0 C8 A:NAG101 3.7 43.6 1.0 C7 A:NAG101 3.9 44.1 1.0 CE B:MET48 4.0 29.7 1.0 C3 A:NAG101 4.0 53.0 1.0 C2 A:NAG101 4.1 50.2 1.0 O3 A:NAG101 4.2 52.4 1.0 CG2 B:THR14 4.3 41.8 1.0 CD B:ARG16 4.6 56.4 1.0 C1 A:NAG101 4.7 49.2 1.0 CG B:ARG16 4.7 53.6 1.0 OD1 A:ASN60 4.8 45.0 1.0 NH1 B:ARG16 4.9 65.4 1.0

Chlorine binding site 5 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl105 b:58.3 occ:1.00 OG1 C:THR80 3.2 48.3 1.0 OD1 C:ASN55 3.3 46.5 1.0 NH2 C:ARG58 3.3 38.4 1.0 N C:ASN56 3.3 40.9 1.0 CB C:ASN55 3.5 43.3 1.0 NH1 C:ARG58 3.6 40.5 1.0 CA C:ASN55 3.8 43.4 1.0 CG C:ASN55 3.8 46.0 1.0 CZ C:ARG58 3.9 38.9 1.0 CB C:ASN56 3.9 39.5 1.0 CG C:ASN56 4.0 38.1 1.0 C C:ASN55 4.1 42.8 1.0 OD1 C:ASN56 4.1 39.8 1.0 CA C:ASN56 4.2 40.6 1.0 ND2 C:ASN56 4.5 37.9 1.0 CB C:THR80 4.5 46.6 1.0 CD2 C:TYR79 4.7 51.8 1.0 CE2 C:TYR79 4.8 52.4 1.0

Chlorine binding site 6 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl106 b:65.7 occ:1.00 N2 B:NAG101 3.1 46.5 1.0 NE C:ARG16 3.2 64.6 1.0 O C:HOH202 3.5 46.2 1.0 NH2 C:ARG16 3.7 69.7 1.0 C3 B:NAG101 3.7 52.4 1.0 CZ C:ARG16 3.8 67.7 1.0 CE C:MET48 3.8 34.7 1.0 O3 B:NAG101 3.9 52.3 1.0 CG2 C:THR14 3.9 44.5 1.0 C8 B:NAG101 4.0 43.5 1.0 C2 B:NAG101 4.0 49.9 1.0 C7 B:NAG101 4.0 44.6 1.0 CD C:ARG16 4.2 61.5 1.0 C1 B:NAG101 4.6 48.6 1.0 CG C:ARG16 4.6 58.8 1.0 OD1 B:ASN60 4.7 39.0 1.0 CG C:MET48 4.9 33.4 1.0 OG1 C:THR14 4.9 45.5 1.0

Chlorine binding site 7 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl104 b:54.0 occ:1.00 OG1 D:THR80 3.2 42.8 1.0 NH2 D:ARG58 3.2 41.3 1.0 N D:ASN56 3.3 38.3 1.0 OD1 D:ASN55 3.6 48.7 1.0 CB D:ASN55 3.7 43.4 1.0 CG D:ASN56 3.8 37.4 1.0 NH1 D:ARG58 3.8 39.9 1.0 CA D:ASN55 3.8 41.5 1.0 CZ D:ARG58 3.9 40.0 1.0 CB D:ASN56 3.9 37.7 1.0 ND2 D:ASN56 4.0 35.6 1.0 OD1 D:ASN56 4.0 39.7 1.0 C D:ASN55 4.0 39.8 1.0 CG D:ASN55 4.1 46.4 1.0 CA D:ASN56 4.2 37.8 1.0 CB D:THR80 4.5 44.8 1.0 CD2 D:TYR79 4.9 54.6 1.0 CE2 D:TYR79 5.0 55.8 1.0

Chlorine binding site 8 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl105 b:60.8 occ:1.00 NH2 D:ARG16 3.1 64.2 1.0 N2 E:NAG101 3.2 49.0 1.0 O E:HOH212 3.2 53.9 1.0 NE D:ARG16 3.3 60.4 1.0 CZ D:ARG16 3.6 62.4 1.0 C8 E:NAG101 3.9 45.3 1.0 C3 E:NAG101 4.0 53.6 1.0 CE D:MET48 4.0 35.6 1.0 C7 E:NAG101 4.0 47.0 1.0 C2 E:NAG101 4.1 50.7 1.0 CG2 D:THR14 4.1 43.5 1.0 O3 E:NAG101 4.3 53.3 1.0 C1 E:NAG101 4.5 49.3 1.0 CD D:ARG16 4.5 56.7 1.0 CG D:ARG16 4.7 53.8 1.0 OD1 E:ASN60 4.8 41.1 1.0 NH1 D:ARG16 4.8 65.1 1.0

Chlorine binding site 9 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl103 b:68.0 occ:1.00 NH2 E:ARG58 2.9 37.1 1.0 N E:ASN56 3.3 40.4 1.0 OG1 E:THR80 3.3 45.1 1.0 NH1 E:ARG58 3.4 39.2 1.0 OD1 E:ASN55 3.5 50.1 1.0 CZ E:ARG58 3.6 37.3 1.0 CG E:ASN56 3.7 40.0 1.0 CB E:ASN55 3.7 44.0 1.0 OD1 E:ASN56 3.9 41.2 1.0 CB E:ASN56 3.9 39.7 1.0 CA E:ASN55 4.0 42.6 1.0 CG E:ASN55 4.0 47.5 1.0 ND2 E:ASN56 4.2 40.0 1.0 C E:ASN55 4.2 41.8 1.0 CA E:ASN56 4.2 40.1 1.0 O E:HOH218 4.2 54.7 1.0 CD2 E:TYR79 4.6 56.1 1.0 CB E:THR80 4.7 44.9 1.0 CE2 E:TYR79 4.8 58.3 1.0 NE E:ARG58 4.9 37.8 1.0

Chlorine binding site 10 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Sll-2 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl104 b:70.5 occ:1.00 NE E:ARG16 3.0 64.1 1.0 N2 F:NAG101 3.2 47.8 1.0 NH2 E:ARG16 3.3 66.3 1.0 CZ E:ARG16 3.4 66.1 1.0 CE E:MET48 3.7 37.5 1.0 C8 F:NAG101 3.7 44.8 1.0 C7 F:NAG101 3.9 46.0 1.0 CD E:ARG16 4.0 59.9 1.0 C3 F:NAG101 4.0 54.4 1.0 O3 F:NAG101 4.0 54.6 1.0 CG2 E:THR14 4.0 46.8 1.0 C2 F:NAG101 4.2 50.7 1.0 NH1 E:ARG16 4.5 67.8 1.0 CG E:ARG16 4.7 55.8 1.0 OD1 F:ASN60 4.8 41.2 1.0 C1 F:NAG101 4.9 49.4 1.0 CG E:MET48 4.9 36.5 1.0 SD E:MET48 5.0 39.9 1.0

A.Kita, M.Jimbo, R.Sakai, Y.Morimoto, R.Takeuchi, H.Tanaka, T.Takahashi, K.Miki. Crystal Structure of A Symbiosis Related Lectin: A Structural Implication of Cell Recognition Between the Symbiotic Algae and the Host Coral. To Be Published.