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Chlorine in PDB 3ww6: Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S, PDB code: 3ww6 was solved by Y.Abe, M.Kubota, Y.Ito, T.Imoto, T.Ueda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.75 / 1.53
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.006, 77.006, 37.185, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 20.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S (pdb code 3ww6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S, PDB code: 3ww6:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3ww6

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Chlorine binding site 1 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:16.9
occ:1.00
O A:HOH326 3.1 21.0 1.0
O A:HOH333 3.2 11.5 1.0
O A:THR69 3.2 14.9 1.0
N A:THR69 3.2 12.1 1.0
O A:HOH357 3.3 22.6 1.0
OG A:SER72 3.5 16.5 1.0
N A:ARG68 3.5 12.1 1.0
C A:GLY67 3.5 14.6 1.0
O A:HOH351 3.6 26.1 1.0
CA A:GLY67 3.6 10.6 1.0
N A:GLY67 3.7 12.9 1.0
C A:THR69 3.7 13.1 1.0
OD1 A:ASN65 3.8 13.3 1.0
CA A:THR69 3.9 14.2 1.0
O A:HOH364 4.0 16.6 1.0
O A:GLY67 4.1 17.2 1.0
CB A:THR69 4.2 12.4 1.0
C A:ARG68 4.2 14.7 1.0
OD1 A:ASP66 4.3 13.1 1.0
CA A:ARG68 4.3 12.4 1.0
O A:HOH398 4.5 24.9 1.0
N A:PRO70 4.6 15.7 1.0
O A:HOH361 4.6 8.7 1.0
CB A:SER72 4.8 18.4 1.0
C A:ASP66 4.8 12.1 1.0
OG1 A:THR69 4.8 12.1 1.0
N A:ASP66 4.9 10.4 1.0
CG A:ASN65 5.0 13.4 1.0

Chlorine binding site 2 out of 5 in 3ww6

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Chlorine binding site 2 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:31.7
occ:1.00
ND2 A:ASN65 3.1 15.4 1.0
CB A:PRO79 3.5 11.9 1.0
CA A:PRO79 3.7 12.7 1.0
CB A:ASN65 3.8 11.1 1.0
CG A:ASN65 4.0 13.4 1.0
N A:PRO79 4.0 11.7 1.0
CG A:PRO79 4.1 17.0 1.0
CD A:PRO79 4.2 13.2 1.0
O A:ASN65 4.2 10.9 1.0
C A:ILE78 4.6 12.8 1.0
O A:ILE78 4.8 12.4 1.0
C A:ASN65 4.9 9.6 1.0
CA A:ASN65 4.9 10.8 1.0
ND2 A:ASN74 5.0 14.5 1.0

Chlorine binding site 3 out of 5 in 3ww6

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Chlorine binding site 3 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:15.1
occ:1.00
OH A:TYR23 3.0 10.7 1.0
O A:HOH363 3.3 13.6 1.0
CZ A:TYR23 3.7 10.4 1.0
CE2 A:TYR23 3.7 9.3 1.0
CA A:GLY104 4.1 9.8 1.0
O A:ARG21 4.5 14.3 1.0
N A:GLY104 4.7 9.6 1.0
CE1 A:TYR23 4.9 9.0 1.0
CD2 A:TYR23 4.9 9.4 1.0
NH1 A:ARG21 4.9 38.5 1.0

Chlorine binding site 4 out of 5 in 3ww6

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Chlorine binding site 4 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:19.4
occ:1.00
OG A:SER24 3.1 13.9 1.0
N A:GLY26 3.1 10.2 1.0
CA A:GLY26 3.5 11.2 1.0
CB A:SER24 3.5 13.5 1.0
CA A:GLN121 3.7 15.6 1.0
CD1 A:ILE124 4.0 20.1 1.0
N A:GLN121 4.0 13.2 1.0
CB A:GLN121 4.1 20.2 1.0
N A:LEU25 4.2 12.0 1.0
CG2 A:VAL120 4.3 13.3 1.0
C A:LEU25 4.3 11.4 1.0
C A:SER24 4.3 11.1 1.0
O A:VAL120 4.4 13.4 1.0
C A:VAL120 4.4 12.2 1.0
CG1 A:ILE124 4.5 14.5 1.0
CA A:SER24 4.6 10.5 1.0
C A:GLY26 4.6 10.4 1.0
CA A:LEU25 4.7 11.8 1.0
N A:ASN27 4.7 8.9 1.0
O A:SER24 4.8 11.0 1.0
CG A:GLN121 4.8 33.5 1.0
C A:GLN121 4.9 13.8 1.0
CB A:LEU25 5.0 11.3 1.0

Chlorine binding site 5 out of 5 in 3ww6

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Chlorine binding site 5 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme Mutant N46D/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:23.8
occ:1.00
O A:HOH388 3.4 29.9 1.0
O A:HOH410 3.4 32.1 1.0
NZ A:LYS33 3.6 20.9 1.0
CE2 A:PHE38 3.7 11.1 1.0
CZ3 A:TRP123 4.0 14.9 1.0
CE A:LYS33 4.1 18.5 1.0
CD A:ARG5 4.2 14.8 1.0
CD A:LYS33 4.2 12.4 1.0
CB A:ARG5 4.4 14.8 1.0
CZ A:PHE38 4.4 10.8 1.0
CD2 A:PHE38 4.6 11.6 1.0
NE A:ARG5 4.6 16.2 1.0
CG A:ARG5 4.7 14.2 1.0
CE3 A:TRP123 4.8 14.5 1.0
CH2 A:TRP123 5.0 14.3 1.0

Reference:

Y.Abe, M.Kubota, S.Takazaki, Y.Ito, H.Yamamoto, D.Kang, T.Ueda, T.Imoto. Effect on Catalysis By Replacement of Catalytic Residue From Hen Egg White Lysozyme to Venerupis Philippinarum Lysozyme Protein Sci. 2016.
ISSN: ESSN 1469-896X
PubMed: 27291073
DOI: 10.1002/PRO.2966
Page generated: Sat Dec 12 10:20:07 2020

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