Chlorine in PDB 3zeu: Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas

The structure of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas, PDB code: 3zeu was solved by C.E.Nichols, H.K.Lamb, P.Thompson, K.El Omari, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.09 / 1.65
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	61.214, 68.084, 87.624, 107.66, 92.63, 116.45
R / Rfree (%)	15.9 / 18.6

The structure of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas (pdb code 3zeu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas, PDB code: 3zeu:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1231 b:51.8 occ:1.00 O A:HOH2129 2.4 36.9 1.0 O A:HOH2089 2.4 41.2 1.0 N A:THR109 3.2 16.8 1.0 N A:ARG110 3.3 14.1 1.0 O A:ARG110 3.5 11.7 1.0 CA A:ALA108 3.7 17.9 1.0 C A:ALA108 3.9 15.3 1.0 CB A:ALA108 3.9 17.9 1.0 OG1 A:THR109 4.0 23.9 1.0 CA A:ARG110 4.1 9.8 1.0 CB A:ARG110 4.1 13.1 1.0 CA A:THR109 4.2 14.1 1.0 C A:THR109 4.2 12.8 1.0 O A:GLU159 4.2 12.9 1.0 C A:ARG110 4.2 9.6 1.0 N A:ALA161 4.4 13.3 1.0 CG A:ARG110 4.5 14.3 1.0 CA A:TRP160 4.6 15.9 1.0 C A:TRP160 4.7 17.0 1.0 CB A:THR109 4.7 21.3 1.0 C A:GLU159 4.8 13.8 1.0 CB A:ALA161 4.8 15.0 1.0 N A:TRP160 5.0 14.8 1.0 N A:ALA108 5.0 18.2 1.0

Chlorine binding site 2 out of 4 in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1338 b:40.4 occ:1.00 O B:ARG328 3.0 44.2 1.0 N B:ARG328 3.1 13.8 1.0 N B:PRO327 3.5 13.9 1.0 CD B:PRO327 3.5 19.2 1.0 C B:ARG328 3.6 28.8 1.0 C B:ARG326 3.6 14.9 1.0 CA B:ARG326 3.6 14.9 1.0 CA B:ARG328 3.7 16.8 1.0 CB B:ARG326 3.8 15.5 1.0 O B:HOH2253 3.9 40.6 1.0 CB B:ARG328 3.9 19.8 1.0 C B:PRO327 4.2 15.4 1.0 O B:ARG326 4.3 13.6 1.0 CA B:PRO327 4.3 17.7 1.0 O B:HOH2254 4.5 42.9 1.0 CG B:ARG326 4.6 24.0 1.0 N B:TRP329 4.6 35.7 1.0 CG B:PRO327 4.7 24.2 1.0 CB B:PRO327 4.8 22.2 1.0 O B:HOH2252 4.8 38.4 1.0 CG B:ARG328 4.9 26.3 1.0

Chlorine binding site 3 out of 4 in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1341 b:31.9 occ:1.00 N B:GLU45 3.1 11.5 1.0 NE1 A:TRP224 3.3 34.6 0.6 CD B:PRO44 3.5 16.0 1.0 CB B:GLU45 3.5 13.7 1.0 N B:PRO44 3.7 14.3 1.0 CG1 B:VAL43 3.8 13.2 1.0 CB B:PRO44 3.8 17.4 1.0 CA B:GLU45 3.9 13.9 1.0 NE1 A:TRP224 3.9 36.0 0.4 CD1 A:TRP224 4.0 31.1 0.6 C B:PRO44 4.0 13.5 1.0 CA B:PRO44 4.1 15.0 1.0 CG B:PRO44 4.1 19.4 1.0 O A:HOH2181 4.2 28.4 1.0 C B:VAL43 4.3 11.4 1.0 CE2 A:TRP224 4.4 33.5 0.6 CD1 A:TRP224 4.5 33.8 0.4 CA B:VAL43 4.8 11.0 1.0 CE2 A:TRP224 4.8 33.7 0.4 CG B:GLU45 4.9 13.1 1.0 CB B:VAL43 4.9 16.6 1.0 CZ2 A:TRP224 4.9 33.0 0.6 O B:VAL43 5.0 11.6 1.0

Chlorine binding site 4 out of 4 in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1338 b:32.5 occ:1.00 N E:GLU45 3.1 11.2 1.0 NE1 D:TRP224 3.4 34.5 0.5 CB E:GLU45 3.5 15.2 1.0 CD E:PRO44 3.6 16.4 1.0 N E:PRO44 3.7 13.8 1.0 CG1 E:VAL43 3.8 12.1 1.0 CB E:PRO44 3.8 14.8 1.0 CA E:GLU45 3.9 11.5 1.0 C E:PRO44 4.0 12.6 1.0 CD1 D:TRP224 4.1 28.0 0.5 NE1 D:TRP224 4.1 35.1 0.5 CA E:PRO44 4.1 11.1 1.0 CG E:PRO44 4.1 14.8 1.0 C E:VAL43 4.4 12.3 1.0 CE2 D:TRP224 4.6 25.8 0.5 CD1 D:TRP224 4.6 30.8 0.5 CA E:VAL43 4.8 10.4 1.0 CG E:GLU45 4.9 13.7 1.0 O D:VAL222 4.9 38.8 0.5 CB E:VAL43 5.0 11.2 1.0

C.E.Nichols, H.K.Lamb, P.Thompson, K.E.Omari, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers. Crystal Structure of the Dimer of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz and Calorimetric Evidence For the Formation of A Ternary Ygjd-Yeaz-Yjee Complex. Protein Sci. V. 22 628 2013.
ISSN: ISSN 0961-8368
PubMed: 23471679
DOI: 10.1002/PRO.2247