Chlorine in PDB 3zjb: The Structure of the Traf Domain of Human TRAF4

The structure of The Structure of the Traf Domain of Human TRAF4, PDB code: 3zjb was solved by A.G.Mcewen, P.Poussin-Courmontagne, A.Rousseau, D.Rogna, Y.Nomine, M.-C.Rio, C.Tomasetto, F.Alpy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.60 / 1.84
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.620, 85.440, 61.650, 90.00, 108.08, 90.00
R / Rfree (%)	16.32 / 19.95

The binding sites of Chlorine atom in the The Structure of the Traf Domain of Human TRAF4 (pdb code 3zjb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Structure of the Traf Domain of Human TRAF4, PDB code: 3zjb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the The Structure of the Traf Domain of Human TRAF4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of the Traf Domain of Human TRAF4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1465 b:60.4 occ:1.00 NE2 A:GLN418 3.3 72.2 1.0 N A:LYS419 3.3 32.2 1.0 CA A:GLN418 3.6 30.2 1.0 CB A:GLN418 3.7 32.5 1.0 CB A:TRP380 3.7 25.4 1.0 O A:HOH2087 3.8 47.2 1.0 CD A:GLN418 3.9 78.4 1.0 C A:GLN418 4.0 32.8 1.0 CB A:LYS419 4.1 35.8 1.0 N A:PRO381 4.1 27.9 1.0 C A:TRP380 4.2 31.6 1.0 CG A:GLN418 4.2 54.8 1.0 CA A:LYS419 4.3 33.0 1.0 CA A:PRO381 4.4 26.4 1.0 CA A:TRP380 4.5 26.4 1.0 CD A:PRO381 4.6 30.1 1.0 O A:TRP380 4.6 30.2 1.0 OE1 A:GLN418 4.6 74.9 1.0 CB A:PRO381 4.7 28.4 1.0 CG A:TRP380 4.8 25.9 1.0 N A:GLN418 4.9 29.6 1.0

Chlorine binding site 2 out of 3 in the The Structure of the Traf Domain of Human TRAF4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of the Traf Domain of Human TRAF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1472 b:61.1 occ:1.00 N B:ASP454 3.3 27.6 1.0 O B:HOH2188 3.4 43.9 1.0 O B:HOH2189 3.6 47.0 1.0 N B:ASP453 3.7 27.8 1.0 CA B:ASP454 3.9 27.2 1.0 CG1 B:VAL451 3.9 28.3 1.0 C B:ARG452 4.1 29.5 1.0 CA B:ARG452 4.1 26.0 1.0 O B:VAL451 4.2 27.6 1.0 C B:ASP453 4.3 31.1 1.0 N B:ARG452 4.3 25.5 1.0 CA B:ASP453 4.3 28.4 1.0 C B:VAL451 4.3 28.3 1.0 CB B:ASP454 4.6 30.2 1.0 O B:HOH2185 4.7 59.9 1.0 CB B:VAL451 4.8 28.1 1.0 O B:ARG452 4.9 28.6 1.0

Chlorine binding site 3 out of 3 in the The Structure of the Traf Domain of Human TRAF4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of the Traf Domain of Human TRAF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1465 b:44.2 occ:1.00 N C:TYR342 2.7 17.0 1.0 O C:HOH2007 2.9 29.7 1.0 CD2 C:TYR338 3.4 14.7 1.0 CE2 C:PHE374 3.4 24.8 1.0 CG C:TYR338 3.5 14.5 1.0 CA C:TYR342 3.5 16.8 1.0 C C:LYS341 3.6 21.6 1.0 CA C:LYS341 3.6 19.2 1.0 CD C:LYS341 3.7 31.7 1.0 CE2 C:TYR338 3.8 16.0 1.0 CD1 C:TYR338 3.9 16.4 1.0 CB C:TYR338 3.9 15.1 1.0 CD2 C:PHE374 4.0 22.9 1.0 O C:HIS340 4.0 18.1 1.0 CD1 C:TYR342 4.1 21.2 1.0 CG C:LYS341 4.1 23.8 1.0 CZ C:PHE374 4.2 23.0 1.0 CZ C:TYR338 4.2 21.6 1.0 CE C:LYS341 4.2 31.5 1.0 N C:GLY343 4.2 17.7 1.0 CE1 C:TYR338 4.3 17.6 1.0 C C:TYR342 4.4 20.1 1.0 NZ C:LYS341 4.5 33.3 1.0 CB C:LYS341 4.5 22.1 1.0 O C:GLU301 4.5 23.5 1.0 CG C:TYR342 4.6 18.9 1.0 N C:LYS341 4.6 19.4 1.0 CB C:TYR342 4.6 17.3 1.0 CG2 C:VAL304 4.7 18.8 1.0 C C:HIS340 4.7 21.8 1.0 CE1 C:TYR342 4.7 25.0 1.0 O C:LYS341 4.8 21.4 1.0

A.Rousseau, A.G.Mcewen, P.Poussin-Courmontagne, D.Rognan, Y.Nomine, M.-C.Rio, C.Tomasetto, F.Alpy. TRAF4 Is A Novel Phosphoinositide-Binding Protein Modulating Tight Junctions and Favoring Cell Migration. Plos Biol. V. 11 1726 2013.
ISSN: ISSN 1544-9173
PubMed: 24311986
DOI: 10.1371/JOURNAL.PBIO.1001726