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Chlorine in PDB 3zmd: Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor

Protein crystallography data

The structure of Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor, PDB code: 3zmd was solved by C.E.M.Stevenson, H.Kock, S.Mootien, S.C.Davies, M.J.Bibb, D.M.Lawson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.68 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.648, 120.483, 144.290, 90.00, 90.00, 90.00
R / Rfree (%) 21.477 / 24.282

Other elements in 3zmd:

The structure of Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor (pdb code 3zmd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor, PDB code: 3zmd:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3zmd

Go back to Chlorine Binding Sites List in 3zmd
Chlorine binding site 1 out of 3 in the Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:43.7
occ:1.00
N D:GLY57 3.2 39.2 1.0
N A:GLY57 3.2 35.0 1.0
NA D:NA301 3.4 34.0 1.0
NA A:NA301 3.5 31.3 1.0
OE2 A:GLU56 3.8 67.0 1.0
OE2 D:GLU56 3.9 62.1 1.0
O A:HOH2034 3.9 61.8 1.0
CA A:GLY57 4.0 34.3 1.0
CA D:GLY57 4.0 37.7 1.0
OE1 D:GLU56 4.0 62.0 1.0
OE1 A:GLU56 4.0 66.3 1.0
CD A:GLU56 4.0 60.4 1.0
CA D:GLU56 4.0 44.0 1.0
CD D:GLU56 4.0 60.1 1.0
C D:GLU56 4.0 40.1 1.0
CA A:GLU56 4.1 40.7 1.0
C A:GLU56 4.1 35.9 1.0
O D:SER55 4.2 38.8 1.0
O A:SER55 4.3 33.7 1.0
N D:ASP58 4.5 36.3 1.0
OD1 D:ASP58 4.6 42.2 1.0
N A:ASP58 4.6 30.9 1.0
OD1 A:ASP58 4.6 36.9 1.0
C A:GLY57 4.7 33.2 1.0
C D:GLY57 4.7 36.6 1.0
CG D:GLU56 4.9 56.0 1.0
CG A:GLU56 4.9 52.0 1.0
CB D:GLU56 4.9 49.3 1.0
N D:GLU56 4.9 41.0 1.0
C D:SER55 4.9 39.3 1.0
CB A:GLU56 5.0 46.6 1.0

Chlorine binding site 2 out of 3 in 3zmd

Go back to Chlorine Binding Sites List in 3zmd
Chlorine binding site 2 out of 3 in the Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:40.7
occ:1.00
NA B:NA301 3.0 25.0 1.0
N B:GLY57 3.4 35.2 1.0
CA B:GLU56 3.7 39.3 1.0
O B:SER55 3.8 31.7 1.0
OE1 B:GLU56 3.9 56.6 1.0
CD B:GLU56 4.0 51.7 1.0
C B:GLU56 4.1 36.0 1.0
OE2 B:GLU56 4.1 52.0 1.0
CA B:GLY57 4.4 32.8 1.0
C B:SER55 4.5 34.6 1.0
N B:GLU56 4.5 35.9 1.0
OD1 B:ASP58 4.6 29.7 1.0
CB B:GLU56 4.7 43.3 1.0
CG B:GLU56 4.7 48.2 1.0
N B:ASP58 4.8 28.4 1.0

Chlorine binding site 3 out of 3 in 3zmd

Go back to Chlorine Binding Sites List in 3zmd
Chlorine binding site 3 out of 3 in the Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:47.4
occ:1.00
NE D:ARG61 3.4 59.2 1.0
N D:SER63 3.5 47.0 1.0
OG D:SER63 3.5 55.0 1.0
O D:LEU101 3.6 41.0 1.0
N D:LEU101 3.6 45.2 1.0
N D:MET62 3.7 41.2 1.0
NH2 D:ARG61 3.8 63.8 1.0
CB D:MET62 3.9 44.2 1.0
CZ D:ARG61 4.1 61.1 1.0
CB D:SER63 4.1 53.6 1.0
CA D:GLY100 4.2 51.1 1.0
CA D:MET62 4.2 42.5 1.0
CB D:ARG61 4.3 47.9 1.0
C D:MET62 4.3 44.7 1.0
C D:GLY100 4.3 47.0 1.0
CD D:ARG61 4.4 54.4 1.0
CA D:LEU101 4.4 43.0 1.0
CA D:SER63 4.4 50.1 1.0
C D:LEU101 4.4 40.2 1.0
C D:ARG61 4.4 41.7 1.0
CB D:LEU101 4.6 46.4 1.0
CA D:ARG61 4.6 42.8 1.0
O D:ARG99 4.7 59.5 1.0
CG D:ARG61 4.8 52.0 1.0
CG D:MET62 4.9 44.3 1.0

Reference:

C.E.M.Stevenson, H.Kock, S.Mootien, S.C.Davies, M.J.Bibb, D.M.Lawson. Crystal Structure of Absc, A Marr Family Transcriptional Regulator From Streptomyces Coelicolor To Be Published.
Page generated: Sat Dec 12 10:21:25 2020

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