Atomistry » Chlorine » PDB 3zoq-3zx0 » 3zty
Atomistry »
  Chlorine »
    PDB 3zoq-3zx0 »
      3zty »

Chlorine in PDB 3zty: The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27

Enzymatic activity of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27

All present enzymatic activity of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27, PDB code: 3zty was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.56 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.692, 70.835, 92.735, 90.00, 95.04, 90.00
R / Rfree (%) 19.5 / 25.3

Other elements in 3zty:

The structure of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 also contains other interesting chemical elements:

Gadolinium (Gd) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 (pdb code 3zty). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27, PDB code: 3zty:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3zty

Go back to Chlorine Binding Sites List in 3zty
Chlorine binding site 1 out of 2 in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl264

b:42.6
occ:1.00
O A:HOH2004 3.0 23.6 1.0
OG1 A:THR39 3.1 16.3 1.0
O A:HOH2006 3.1 26.8 1.0
N A:ASP8 3.3 36.2 1.0
OD1 A:ASP6 3.4 27.6 1.0
CB A:ASP8 3.6 37.4 1.0
CB A:LEU7 3.9 34.3 1.0
N A:LEU7 4.0 31.5 1.0
CG A:ASP8 4.0 38.8 1.0
CA A:ASP8 4.0 38.0 1.0
N A:ALA40 4.1 15.4 1.0
CB A:THR39 4.1 16.1 1.0
CA A:LEU7 4.2 34.3 1.0
C A:LEU7 4.2 36.3 1.0
GD A:GD261 4.3 42.6 1.0
CE A:LYS41 4.3 18.7 1.0
CG A:ASP6 4.3 28.4 1.0
O A:HOH2085 4.4 28.1 1.0
CG A:LYS41 4.4 16.5 1.0
O A:ASP8 4.4 35.3 1.0
OD2 A:ASP8 4.4 38.8 1.0
OD1 A:ASP8 4.4 40.0 1.0
CA A:THR39 4.5 15.9 1.0
CD A:LYS41 4.6 17.6 1.0
OD2 A:ASP6 4.7 29.7 1.0
C A:ASP8 4.8 37.7 1.0
CB A:ALA40 4.8 15.5 1.0
N A:LYS41 4.8 14.9 1.0
C A:THR39 4.9 15.2 1.0
CG A:LEU7 5.0 33.6 1.0
CA A:ALA40 5.0 14.9 1.0

Chlorine binding site 2 out of 2 in 3zty

Go back to Chlorine Binding Sites List in 3zty
Chlorine binding site 2 out of 2 in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl264

b:52.0
occ:1.00
O B:HOH2003 2.9 25.9 1.0
O B:HOH2001 2.9 47.6 1.0
OD1 B:ASP6 3.1 28.1 1.0
N B:ASP8 3.2 34.2 1.0
CB B:ASP8 3.4 35.9 1.0
OG1 B:THR39 3.5 19.7 1.0
GD B:GD261 3.6 35.7 1.0
CG B:ASP8 3.8 36.9 1.0
CA B:ASP8 3.8 35.7 1.0
O B:HOH2050 3.8 23.4 1.0
OD2 B:ASP8 4.0 36.4 1.0
N B:LEU7 4.0 30.4 1.0
CG B:ASP6 4.0 28.3 1.0
O B:ASP8 4.1 33.2 1.0
C B:LEU7 4.1 34.3 1.0
CB B:LEU7 4.1 33.7 1.0
CA B:LEU7 4.3 32.9 1.0
OD2 B:ASP6 4.3 29.2 1.0
C B:ASP8 4.5 35.3 1.0
O B:HOH2002 4.5 14.1 1.0
CE B:LYS41 4.5 20.6 1.0
N B:ALA40 4.5 17.0 1.0
CB B:THR39 4.5 20.4 1.0
OD1 B:ASP8 4.5 38.4 1.0
CA B:THR39 4.8 18.8 1.0
CG B:LYS41 4.8 20.1 1.0
CD B:LYS41 5.0 21.1 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Sun Jul 21 08:30:00 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy