Atomistry » Chlorine » PDB 3zot-3zx2 » 3zwu
Atomistry »
  Chlorine »
    PDB 3zot-3zx2 »
      3zwu »

Chlorine in PDB 3zwu: Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue

Enzymatic activity of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue

All present enzymatic activity of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue:
3.1.3.1;

Protein crystallography data

The structure of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue, PDB code: 3zwu was solved by S.C.Yong, P.Roversi, J.E.D.Lillington, O.B.Zeldin, E.F.Garman, S.M.Lea, B.C.Berks, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.42 / 1.39
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.790, 71.470, 227.830, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.13

Other elements in 3zwu:

The structure of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 6 atoms
Vanadium (V) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue (pdb code 3zwu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue, PDB code: 3zwu:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3zwu

Go back to Chlorine Binding Sites List in 3zwu
Chlorine binding site 1 out of 4 in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1589

b:15.7
occ:1.00
O A:HOH2489 3.2 27.5 1.0
O A:HOH2879 3.2 24.2 1.0
N A:ASN555 3.2 12.6 1.0
N A:GLY557 3.3 13.8 1.0
CA A:GLY553 3.4 10.2 1.0
CA A:GLY530 3.6 10.3 1.0
C A:GLY553 3.6 13.1 1.0
CB A:ASN555 3.7 13.8 1.0
CA A:ASN555 3.7 12.7 1.0
C A:ASN555 3.7 16.9 1.0
N A:GLU554 3.7 11.8 1.0
N A:GLY556 3.7 13.5 1.0
CA A:GLY557 3.8 13.2 1.0
CG2 A:ILE529 3.8 13.8 1.0
N A:GLY530 4.0 11.0 1.0
O A:GLY553 4.1 12.2 1.0
N A:GLY553 4.2 9.7 1.0
O A:ILE529 4.3 12.8 1.0
C A:ILE529 4.3 13.2 1.0
C A:GLU554 4.3 15.2 1.0
O A:ASN555 4.3 17.8 1.0
C A:GLY556 4.3 17.6 1.0
C A:GLY557 4.4 14.6 1.0
CG A:ASN555 4.5 32.1 1.0
CA A:GLU554 4.6 11.5 1.0
CA A:GLY556 4.6 13.6 1.0
ND2 A:ASN555 4.6 26.5 1.0
N A:SER558 4.7 10.6 1.0
C A:GLY530 4.8 13.0 1.0
CG A:GLU554 4.8 17.4 1.0
CB A:ILE529 5.0 12.8 1.0
O A:GLY557 5.0 14.0 1.0

Chlorine binding site 2 out of 4 in 3zwu

Go back to Chlorine Binding Sites List in 3zwu
Chlorine binding site 2 out of 4 in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1590

b:18.7
occ:1.00
O A:HOH2312 2.8 18.8 1.0
O A:HOH2317 2.9 18.0 1.0
NE2 A:GLN344 3.3 17.1 1.0
O A:ARG328 3.5 13.4 1.0
CG A:GLN344 3.7 12.0 1.0
C A:ARG328 3.7 12.4 1.0
CG A:ARG328 3.7 10.8 1.0
N A:ASP330 3.7 10.6 1.0
CD A:ARG328 3.8 10.8 1.0
CB A:ARG328 3.9 10.3 1.0
CA A:GLY343 3.9 9.4 1.0
C A:PHE329 3.9 12.5 1.0
CD A:GLN344 4.0 21.0 1.0
N A:PHE329 4.0 9.1 1.0
N A:GLN344 4.1 8.6 1.0
CA A:PHE329 4.1 8.8 1.0
O A:GLN342 4.2 11.1 1.0
C A:GLY343 4.2 11.1 1.0
O A:HOH2649 4.3 21.9 1.0
CA A:ASP330 4.3 10.5 1.0
CB A:ASP330 4.3 11.5 1.0
CA A:ARG328 4.4 9.2 1.0
O A:PHE329 4.5 12.0 1.0
O A:HOH2316 4.5 31.1 1.0
CB A:GLN344 4.6 9.6 1.0
N A:GLY343 4.7 9.6 1.0
O A:HOH2681 4.7 14.7 1.0
O A:HOH2654 4.7 18.2 1.0
C A:GLN342 4.8 11.9 1.0
O A:HOH2652 4.9 18.6 1.0
CA A:GLN344 5.0 8.3 1.0

Chlorine binding site 3 out of 4 in 3zwu

Go back to Chlorine Binding Sites List in 3zwu
Chlorine binding site 3 out of 4 in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1589

b:13.7
occ:1.00
O B:HOH2767 3.1 18.4 1.0
O B:HOH2417 3.2 24.8 1.0
N B:ASN555 3.2 10.5 1.0
N B:GLY557 3.3 11.9 1.0
CA B:GLY553 3.4 8.7 1.0
C B:GLY553 3.6 11.1 1.0
CA B:GLY530 3.6 9.1 1.0
CB B:ASN555 3.6 11.9 1.0
CA B:ASN555 3.7 10.9 1.0
C B:ASN555 3.7 15.4 1.0
N B:GLU554 3.7 9.1 1.0
N B:GLY556 3.7 12.4 1.0
CG2 B:ILE529 3.8 11.4 1.0
CA B:GLY557 3.8 11.5 1.0
N B:GLY530 4.0 9.6 1.0
O B:GLY553 4.1 10.2 1.0
N B:GLY553 4.2 8.6 1.0
O B:ILE529 4.3 9.3 1.0
C B:ILE529 4.3 10.5 1.0
O B:ASN555 4.3 15.6 1.0
C B:GLU554 4.3 13.1 1.0
C B:GLY556 4.3 16.3 1.0
C B:GLY557 4.4 14.0 1.0
CG B:ASN555 4.5 26.8 1.0
CA B:GLU554 4.6 8.8 1.0
CA B:GLY556 4.6 12.6 1.0
ND2 B:ASN555 4.6 22.6 1.0
N B:SER558 4.7 10.1 1.0
C B:GLY530 4.8 11.4 1.0
CG B:GLU554 4.8 11.2 1.0
O B:HOH2768 4.8 36.5 1.0
CB B:ILE529 4.9 10.3 1.0
O B:GLY557 5.0 14.1 1.0

Chlorine binding site 4 out of 4 in 3zwu

Go back to Chlorine Binding Sites List in 3zwu
Chlorine binding site 4 out of 4 in the Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Pseudomonas Fluorescens Phox in Complex with Vanadate, A Transition State Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1590

b:22.0
occ:1.00
O B:HOH2271 2.9 21.8 1.0
O B:HOH2274 2.9 27.6 1.0
NE2 B:GLN344 3.2 22.3 1.0
O B:ARG328 3.5 13.8 1.0
CG B:GLN344 3.6 18.7 1.0
C B:ARG328 3.8 14.8 1.0
CG B:ARG328 3.8 15.7 1.0
N B:ASP330 3.8 13.5 1.0
CD B:ARG328 3.8 15.8 1.0
CA B:GLY343 3.9 13.7 1.0
CD B:GLN344 3.9 30.8 1.0
CB B:ARG328 3.9 12.1 1.0
C B:PHE329 4.0 16.0 1.0
N B:GLN344 4.1 13.7 1.0
N B:PHE329 4.1 11.9 1.0
C B:GLY343 4.2 17.0 1.0
O B:GLN342 4.2 15.7 1.0
CA B:PHE329 4.3 11.8 1.0
CB B:ASP330 4.3 14.7 1.0
CA B:ASP330 4.3 13.2 1.0
O B:HOH2552 4.4 27.5 1.0
CB B:GLN344 4.5 14.9 1.0
CA B:ARG328 4.5 11.5 1.0
O B:PHE329 4.6 16.1 1.0
O B:HOH2574 4.7 17.8 1.0
N B:GLY343 4.7 13.7 1.0
C B:GLN342 4.8 16.6 1.0
O B:HOH2553 4.8 17.5 1.0
O B:HOH2555 4.9 21.0 1.0
CA B:GLN344 4.9 13.6 1.0
O B:HOH2577 4.9 44.3 1.0
O B:GLY343 5.0 16.9 1.0

Reference:

S.C.Yong, P.Roversi, J.Lillington, F.Rodriguez, M.Krehenbrink, O.B.Zeldin, E.F.Garman, S.M.Lea, B.C.Berks. A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry Science V. 345 1170 2014.
ISSN: ISSN 0036-8075
PubMed: 25190793
DOI: 10.1126/SCIENCE.1254237
Page generated: Fri Jul 11 12:31:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy