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Chlorine in PDB 4b3t: Crystal Structure of the 30S Ribosome in Complex with Compound 39

Protein crystallography data

The structure of Crystal Structure of the 30S Ribosome in Complex with Compound 39, PDB code: 4b3t was solved by C.L.Ng, K.Lang, D.Shcherbakov, T.Matt, D.Perez-Fernandez, R.Patak, M.Meyer, S.Duscha, R.Akbergenov, H.Boukari, P.Freihofer, I.Kudyba, M.S.K.Reddy, R.S.Nandurikar, V.Ramakrishnan, A.Vasella, E.C.Bottger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 401.730, 401.730, 173.910, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 24.3

Other elements in 4b3t:

The structure of Crystal Structure of the 30S Ribosome in Complex with Compound 39 also contains other interesting chemical elements:

Magnesium (Mg) 219 atoms
Potassium (K) 17 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the 30S Ribosome in Complex with Compound 39 (pdb code 4b3t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the 30S Ribosome in Complex with Compound 39, PDB code: 4b3t:

Chlorine binding site 1 out of 1 in 4b3t

Go back to Chlorine Binding Sites List in 4b3t
Chlorine binding site 1 out of 1 in the Crystal Structure of the 30S Ribosome in Complex with Compound 39


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the 30S Ribosome in Complex with Compound 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2733

b:90.4
occ:1.00
CLA A:3TS2733 0.0 90.4 1.0
CBD A:3TS2733 1.7 90.9 1.0
CAN A:3TS2733 2.7 90.0 1.0
CAO A:3TS2733 2.8 91.0 1.0
CG2 L:THR40 3.3 61.0 1.0
CB L:THR40 3.7 60.8 1.0
OG1 L:THR40 3.9 60.4 1.0
CAP A:3TS2733 4.1 88.6 1.0
CAQ A:3TS2733 4.1 89.0 1.0
N7 A:A1492 4.5 57.6 1.0
CBE A:3TS2733 4.6 87.2 1.0
C8 A:A1492 4.6 57.8 1.0
MG L:MG1127 4.6 81.8 1.0

Reference:

D.Perez-Fernandez, D.Shcherbakov, T.Matt, N.C.Leong, I.Kudyba, S.Duscha, H.Boukari, R.Patak, S.R.Dubakka, K.Lang, M.Meyer, R.Akbergenov, P.Freihofer, S.Vaddi, P.Thommes, V.Ramakrishnan, A.Vasella, E.C.Bottger. 4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics Nat.Commun. V. 5 3112 2014.
ISSN: ESSN 2041-1723
PubMed: 24473108
DOI: 10.1038/NCOMMS4112
Page generated: Sat Dec 12 10:25:22 2020

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