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Chlorine in PDB 4b96: Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum

Protein crystallography data

The structure of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum, PDB code: 4b96 was solved by O.Yaniv, Y.H.K.Reddy, H.Yoffe, L.J.W.Shimon, E.A.Bayer, R.Lamed, F.Frolow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.278 / 1.91
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 135.212, 135.212, 54.323, 90.00, 90.00, 120.00
R / Rfree (%) 15.28 / 18.89

Other elements in 4b96:

The structure of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum (pdb code 4b96). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum, PDB code: 4b96:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 1 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1152

b:33.1
occ:1.00
NZ A:LYS135 3.1 28.1 1.0
CD A:LYS135 3.7 21.8 1.0
CE A:LYS135 3.7 28.1 1.0
O A:HOH2060 4.4 46.9 1.0
O A:HOH2144 4.5 34.2 1.0

Chlorine binding site 2 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 2 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1153

b:46.6
occ:1.00
N A:TYR132 3.1 19.9 1.0
CA A:SER131 3.5 23.1 1.0
CD2 A:TYR132 3.5 27.5 1.0
O A:HOH2152 3.7 46.9 1.0
C A:SER131 3.8 22.3 1.0
CB A:SER131 3.8 28.0 1.0
CG A:TYR132 4.1 23.2 1.0
CB A:TYR132 4.1 19.1 1.0
CA A:TYR132 4.2 16.0 1.0
CE2 A:TYR132 4.3 26.9 1.0
OG A:SER131 4.4 38.4 1.0
O A:PHE130 4.8 24.5 1.0
N A:SER131 4.8 17.7 1.0
O A:TYR132 4.8 17.7 1.0
O A:SER131 5.0 19.1 1.0

Chlorine binding site 3 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 3 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1154

b:45.0
occ:1.00
O A:LEU144 2.8 19.9 1.0
O A:HOH2164 3.7 19.5 1.0
CG A:LYS143 3.7 41.2 1.0
C A:LEU144 3.9 21.1 1.0
CD A:LYS143 4.1 49.4 1.0
O A:HOH2163 4.4 27.3 1.0
N A:LEU144 4.4 21.3 1.0
CA A:LEU144 4.7 18.0 1.0
CB A:LYS143 4.7 31.8 1.0
CA A:VAL145 4.8 16.3 1.0
N A:VAL145 4.8 16.0 1.0
CG1 A:VAL145 4.9 19.8 1.0
C A:LYS143 4.9 23.1 1.0

Reference:

O.Yaniv, Y.H.K.Reddy, E.A.Bayer, R.Lamed, F.Frolow. Structure of CBM3B From the Biomass Sensoring System of Clostridium Clarifalvum To Be Published.
Page generated: Sun Jul 21 09:50:20 2024

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