Atomistry » Chlorine » PDB 4b4i-4bbm » 4b96
Atomistry »
  Chlorine »
    PDB 4b4i-4bbm »
      4b96 »

Chlorine in PDB 4b96: Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum

Protein crystallography data

The structure of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum, PDB code: 4b96 was solved by O.Yaniv, Y.H.K.Reddy, H.Yoffe, L.J.W.Shimon, E.A.Bayer, R.Lamed, F.Frolow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.278 / 1.91
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 135.212, 135.212, 54.323, 90.00, 90.00, 120.00
R / Rfree (%) 15.28 / 18.89

Other elements in 4b96:

The structure of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum (pdb code 4b96). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum, PDB code: 4b96:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 1 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1152

b:33.1
occ:1.00
NZ A:LYS135 3.1 28.1 1.0
CD A:LYS135 3.7 21.8 1.0
CE A:LYS135 3.7 28.1 1.0
O A:HOH2060 4.4 46.9 1.0
O A:HOH2144 4.5 34.2 1.0

Chlorine binding site 2 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 2 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1153

b:46.6
occ:1.00
N A:TYR132 3.1 19.9 1.0
CA A:SER131 3.5 23.1 1.0
CD2 A:TYR132 3.5 27.5 1.0
O A:HOH2152 3.7 46.9 1.0
C A:SER131 3.8 22.3 1.0
CB A:SER131 3.8 28.0 1.0
CG A:TYR132 4.1 23.2 1.0
CB A:TYR132 4.1 19.1 1.0
CA A:TYR132 4.2 16.0 1.0
CE2 A:TYR132 4.3 26.9 1.0
OG A:SER131 4.4 38.4 1.0
O A:PHE130 4.8 24.5 1.0
N A:SER131 4.8 17.7 1.0
O A:TYR132 4.8 17.7 1.0
O A:SER131 5.0 19.1 1.0

Chlorine binding site 3 out of 3 in 4b96

Go back to Chlorine Binding Sites List in 4b96
Chlorine binding site 3 out of 3 in the Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Family 3B Carbohydrate-Binding Module From the Biomass Sensoring System of Clostridium Clariflavum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1154

b:45.0
occ:1.00
O A:LEU144 2.8 19.9 1.0
O A:HOH2164 3.7 19.5 1.0
CG A:LYS143 3.7 41.2 1.0
C A:LEU144 3.9 21.1 1.0
CD A:LYS143 4.1 49.4 1.0
O A:HOH2163 4.4 27.3 1.0
N A:LEU144 4.4 21.3 1.0
CA A:LEU144 4.7 18.0 1.0
CB A:LYS143 4.7 31.8 1.0
CA A:VAL145 4.8 16.3 1.0
N A:VAL145 4.8 16.0 1.0
CG1 A:VAL145 4.9 19.8 1.0
C A:LYS143 4.9 23.1 1.0

Reference:

O.Yaniv, Y.H.K.Reddy, E.A.Bayer, R.Lamed, F.Frolow. Structure of CBM3B From the Biomass Sensoring System of Clostridium Clarifalvum To Be Published.
Page generated: Sat Dec 12 10:25:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy