Atomistry » Chlorine » PDB 4b4i-4bbm » 4bae
Atomistry »
  Chlorine »
    PDB 4b4i-4bbm »
      4bae »

Chlorine in PDB 4bae: Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

Enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

All present enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis:
5.99.1.3;

Protein crystallography data

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae was solved by J.A.Read, H.G.Gingell, P.Madhavapeddi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.19 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.191, 78.249, 89.750, 90.00, 90.01, 90.00
R / Rfree (%) 19.42 / 23.72

Other elements in 4bae:

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis (pdb code 4bae). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 1 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1256

b:50.7
occ:1.00
CL3 A:RWX1256 0.0 50.7 1.0
C3 A:RWX1256 1.7 54.5 1.0
C2 A:RWX1256 2.7 51.7 1.0
C4 A:RWX1256 2.8 59.3 1.0
C1 A:RWX1256 3.3 48.6 1.0
BR3 A:RWX1256 3.5 71.0 1.0
ND2 A:ASN52 3.5 51.4 1.0
CG1 A:VAL125 3.6 53.5 1.0
CB A:ASN52 3.7 49.4 1.0
CG2 A:VAL125 3.8 55.4 1.0
CG1 A:ILE171 3.8 50.5 1.0
N6 A:RWX1256 3.8 51.6 1.0
O A:VAL49 3.8 46.1 1.0
C5 A:RWX1256 3.9 54.0 1.0
CG A:ASN52 4.0 62.2 1.0
CA A:VAL49 4.1 45.0 1.0
CB A:VAL49 4.3 50.3 1.0
CB A:VAL125 4.3 54.5 1.0
C A:VAL49 4.4 45.5 1.0
CD1 A:ILE171 4.6 52.2 1.0
CB A:ILE171 4.7 49.7 1.0
CD1 A:ILE84 4.9 68.8 1.0

Chlorine binding site 2 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 2 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1255

b:43.8
occ:1.00
CL3 B:RWX1255 0.0 43.8 1.0
C3 B:RWX1255 1.7 47.6 1.0
C2 B:RWX1255 2.7 46.7 1.0
C4 B:RWX1255 2.8 52.9 1.0
BR3 B:RWX1255 3.4 65.5 1.0
C1 B:RWX1255 3.4 42.0 1.0
ND2 B:ASN52 3.7 46.1 1.0
CG1 B:ILE171 3.7 51.5 1.0
CG2 B:VAL125 3.7 47.2 1.0
N6 B:RWX1255 3.8 48.3 1.0
CB B:ASN52 3.9 44.5 1.0
CG1 B:VAL49 3.9 47.0 1.0
C5 B:RWX1255 3.9 48.2 1.0
CB B:VAL125 3.9 48.0 1.0
O B:VAL49 4.0 50.0 1.0
CG B:ASN52 4.2 64.5 1.0
CA B:VAL49 4.2 45.1 1.0
CG1 B:VAL125 4.2 49.0 1.0
CB B:VAL49 4.4 47.5 1.0
CD1 B:ILE171 4.4 49.5 1.0
C B:VAL49 4.5 48.4 1.0
CG2 B:VAL49 4.6 46.5 1.0
CB B:ILE171 4.7 50.1 1.0
CD1 B:ILE84 4.7 56.8 1.0

Chlorine binding site 3 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 3 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1256

b:40.5
occ:1.00
CL3 C:RWX1256 0.0 40.5 1.0
C3 C:RWX1256 1.7 44.7 1.0
C2 C:RWX1256 2.7 39.2 1.0
C4 C:RWX1256 2.8 49.5 1.0
C1 C:RWX1256 3.3 34.9 1.0
BR3 C:RWX1256 3.3 61.4 1.0
ND2 C:ASN52 3.7 53.4 1.0
CG1 C:ILE171 3.8 44.1 1.0
CB C:ASN52 3.8 40.9 1.0
N6 C:RWX1256 3.8 39.5 1.0
CG2 C:VAL125 3.9 46.3 1.0
C5 C:RWX1256 3.9 43.2 1.0
CG1 C:VAL49 4.0 45.5 1.0
O C:VAL49 4.0 43.1 1.0
CB C:VAL125 4.1 47.4 1.0
CG C:ASN52 4.1 62.6 1.0
CA C:VAL49 4.3 39.3 1.0
CG1 C:VAL125 4.3 48.4 1.0
CD1 C:ILE171 4.5 43.6 1.0
CB C:VAL49 4.6 44.6 1.0
C C:VAL49 4.6 42.3 1.0
CD1 C:ILE84 4.7 59.9 1.0
CG2 C:VAL49 4.8 44.3 1.0
CB C:ILE171 4.8 42.3 1.0
CG2 C:THR169 5.0 52.8 1.0

Chlorine binding site 4 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 4 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1257

b:33.8
occ:1.00
CL3 D:RWX1257 0.0 33.8 1.0
C3 D:RWX1257 1.7 39.5 1.0
C2 D:RWX1257 2.7 36.4 1.0
C4 D:RWX1257 2.8 44.5 1.0
C1 D:RWX1257 3.4 32.0 1.0
BR3 D:RWX1257 3.4 60.4 1.0
ND2 D:ASN52 3.6 48.4 1.0
CG2 D:VAL125 3.7 42.9 1.0
CG1 D:ILE171 3.8 42.2 1.0
CB D:ASN52 3.8 34.9 1.0
N6 D:RWX1257 3.8 34.9 1.0
CG1 D:VAL49 3.9 45.1 1.0
C5 D:RWX1257 3.9 38.8 1.0
O D:VAL49 4.0 42.9 1.0
CB D:VAL125 4.0 44.1 1.0
CG D:ASN52 4.1 58.0 1.0
CA D:VAL49 4.2 41.1 1.0
CB D:VAL49 4.5 45.2 1.0
CD1 D:ILE171 4.5 37.2 1.0
CG1 D:VAL125 4.5 44.8 1.0
C D:VAL49 4.6 42.6 1.0
CG2 D:VAL49 4.7 44.4 1.0
CB D:ILE171 4.8 41.1 1.0
CD1 D:ILE84 4.8 50.1 1.0

Reference:

S.P.Hameed, S.Solapure, K.Mukherjee, V.Nandi, D.Waterson, R.Shandil, M.Balganesh, V.K.Sambandamurthy, A.K.Raichurkar, A.Deshpande, A.Ghosh, D.Awasthy, G.Shanbhag, G.Sheikh, H.Mcmiken, J.Puttur, J.Reddy, J.Werngren, J.Read, M.Kumar, M.R, M.Chinnapattu, P.Madhavapeddi, P.Manjrekar, R.Basu, S.Gaonkar, S.Sharma, S.Hoffner, V.Humnabadkar, V.Subbulakshmi, V.Panduga. Optimization of Pyrrolamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis. Antimicrob.Agents Chemother. V. 58 61 2014.
ISSN: ISSN 0066-4804
PubMed: 24126580
DOI: 10.1128/AAC.01751-13
Page generated: Sat Dec 12 10:25:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy