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Chlorine in PDB 4bae: Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

Enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

All present enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis:
5.99.1.3;

Protein crystallography data

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae was solved by J.A.Read, H.G.Gingell, P.Madhavapeddi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.19 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.191, 78.249, 89.750, 90.00, 90.01, 90.00
R / Rfree (%) 19.42 / 23.72

Other elements in 4bae:

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Calcium (Ca) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis (pdb code 4bae). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 1 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1256

b:50.7
occ:1.00
CL3 A:RWX1256 0.0 50.7 1.0
C3 A:RWX1256 1.7 54.5 1.0
C2 A:RWX1256 2.7 51.7 1.0
C4 A:RWX1256 2.8 59.3 1.0
C1 A:RWX1256 3.3 48.6 1.0
BR3 A:RWX1256 3.5 71.0 1.0
ND2 A:ASN52 3.5 51.4 1.0
CG1 A:VAL125 3.6 53.5 1.0
CB A:ASN52 3.7 49.4 1.0
CG2 A:VAL125 3.8 55.4 1.0
CG1 A:ILE171 3.8 50.5 1.0
N6 A:RWX1256 3.8 51.6 1.0
O A:VAL49 3.8 46.1 1.0
C5 A:RWX1256 3.9 54.0 1.0
CG A:ASN52 4.0 62.2 1.0
CA A:VAL49 4.1 45.0 1.0
CB A:VAL49 4.3 50.3 1.0
CB A:VAL125 4.3 54.5 1.0
C A:VAL49 4.4 45.5 1.0
CD1 A:ILE171 4.6 52.2 1.0
CB A:ILE171 4.7 49.7 1.0
CD1 A:ILE84 4.9 68.8 1.0

Chlorine binding site 2 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 2 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1255

b:43.8
occ:1.00
CL3 B:RWX1255 0.0 43.8 1.0
C3 B:RWX1255 1.7 47.6 1.0
C2 B:RWX1255 2.7 46.7 1.0
C4 B:RWX1255 2.8 52.9 1.0
BR3 B:RWX1255 3.4 65.5 1.0
C1 B:RWX1255 3.4 42.0 1.0
ND2 B:ASN52 3.7 46.1 1.0
CG1 B:ILE171 3.7 51.5 1.0
CG2 B:VAL125 3.7 47.2 1.0
N6 B:RWX1255 3.8 48.3 1.0
CB B:ASN52 3.9 44.5 1.0
CG1 B:VAL49 3.9 47.0 1.0
C5 B:RWX1255 3.9 48.2 1.0
CB B:VAL125 3.9 48.0 1.0
O B:VAL49 4.0 50.0 1.0
CG B:ASN52 4.2 64.5 1.0
CA B:VAL49 4.2 45.1 1.0
CG1 B:VAL125 4.2 49.0 1.0
CB B:VAL49 4.4 47.5 1.0
CD1 B:ILE171 4.4 49.5 1.0
C B:VAL49 4.5 48.4 1.0
CG2 B:VAL49 4.6 46.5 1.0
CB B:ILE171 4.7 50.1 1.0
CD1 B:ILE84 4.7 56.8 1.0

Chlorine binding site 3 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 3 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1256

b:40.5
occ:1.00
CL3 C:RWX1256 0.0 40.5 1.0
C3 C:RWX1256 1.7 44.7 1.0
C2 C:RWX1256 2.7 39.2 1.0
C4 C:RWX1256 2.8 49.5 1.0
C1 C:RWX1256 3.3 34.9 1.0
BR3 C:RWX1256 3.3 61.4 1.0
ND2 C:ASN52 3.7 53.4 1.0
CG1 C:ILE171 3.8 44.1 1.0
CB C:ASN52 3.8 40.9 1.0
N6 C:RWX1256 3.8 39.5 1.0
CG2 C:VAL125 3.9 46.3 1.0
C5 C:RWX1256 3.9 43.2 1.0
CG1 C:VAL49 4.0 45.5 1.0
O C:VAL49 4.0 43.1 1.0
CB C:VAL125 4.1 47.4 1.0
CG C:ASN52 4.1 62.6 1.0
CA C:VAL49 4.3 39.3 1.0
CG1 C:VAL125 4.3 48.4 1.0
CD1 C:ILE171 4.5 43.6 1.0
CB C:VAL49 4.6 44.6 1.0
C C:VAL49 4.6 42.3 1.0
CD1 C:ILE84 4.7 59.9 1.0
CG2 C:VAL49 4.8 44.3 1.0
CB C:ILE171 4.8 42.3 1.0
CG2 C:THR169 5.0 52.8 1.0

Chlorine binding site 4 out of 4 in 4bae

Go back to Chlorine Binding Sites List in 4bae
Chlorine binding site 4 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1257

b:33.8
occ:1.00
CL3 D:RWX1257 0.0 33.8 1.0
C3 D:RWX1257 1.7 39.5 1.0
C2 D:RWX1257 2.7 36.4 1.0
C4 D:RWX1257 2.8 44.5 1.0
C1 D:RWX1257 3.4 32.0 1.0
BR3 D:RWX1257 3.4 60.4 1.0
ND2 D:ASN52 3.6 48.4 1.0
CG2 D:VAL125 3.7 42.9 1.0
CG1 D:ILE171 3.8 42.2 1.0
CB D:ASN52 3.8 34.9 1.0
N6 D:RWX1257 3.8 34.9 1.0
CG1 D:VAL49 3.9 45.1 1.0
C5 D:RWX1257 3.9 38.8 1.0
O D:VAL49 4.0 42.9 1.0
CB D:VAL125 4.0 44.1 1.0
CG D:ASN52 4.1 58.0 1.0
CA D:VAL49 4.2 41.1 1.0
CB D:VAL49 4.5 45.2 1.0
CD1 D:ILE171 4.5 37.2 1.0
CG1 D:VAL125 4.5 44.8 1.0
C D:VAL49 4.6 42.6 1.0
CG2 D:VAL49 4.7 44.4 1.0
CB D:ILE171 4.8 41.1 1.0
CD1 D:ILE84 4.8 50.1 1.0

Reference:

S.P.Hameed, S.Solapure, K.Mukherjee, V.Nandi, D.Waterson, R.Shandil, M.Balganesh, V.K.Sambandamurthy, A.K.Raichurkar, A.Deshpande, A.Ghosh, D.Awasthy, G.Shanbhag, G.Sheikh, H.Mcmiken, J.Puttur, J.Reddy, J.Werngren, J.Read, M.Kumar, M.R, M.Chinnapattu, P.Madhavapeddi, P.Manjrekar, R.Basu, S.Gaonkar, S.Sharma, S.Hoffner, V.Humnabadkar, V.Subbulakshmi, V.Panduga. Optimization of Pyrrolamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis. Antimicrob.Agents Chemother. V. 58 61 2014.
ISSN: ISSN 0066-4804
PubMed: 24126580
DOI: 10.1128/AAC.01751-13
Page generated: Sun Jul 21 09:52:49 2024

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