Atomistry » Chlorine » PDB 4b4i-4bbm » 4bap
Atomistry »
  Chlorine »
    PDB 4b4i-4bbm »
      4bap »

Chlorine in PDB 4bap: Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.

Enzymatic activity of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.

All present enzymatic activity of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution., PDB code: 4bap was solved by R.Talon, R.Kahn, A.Gautier, L.Nauton, E.Girard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.76 / 1.21
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.509, 77.509, 38.482, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.8

Other elements in 4bap:

The structure of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. also contains other interesting chemical elements:

Europium (Eu) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. (pdb code 4bap). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution., PDB code: 4bap:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 1 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1134

b:14.3
occ:1.00
O A:HOH2042 3.0 31.4 1.0
OG A:SER24 3.1 12.5 1.0
N A:GLY26 3.1 8.9 1.0
CB A:SER24 3.5 12.2 1.0
CA A:GLY26 3.5 9.1 1.0
CA A:GLN121 3.6 12.9 0.2
CA A:GLN121 3.6 13.4 0.8
CB A:GLN121 3.8 14.2 0.2
CB A:GLN121 3.9 17.0 0.8
N A:GLN121 4.0 13.2 1.0
CG A:GLN121 4.0 18.2 0.2
CD1 A:ILE124 4.1 24.6 1.0
N A:LEU25 4.1 9.3 1.0
CG A:GLN121 4.2 24.3 0.8
C A:LEU25 4.3 8.6 1.0
C A:SER24 4.3 9.6 1.0
CG2 A:VAL120 4.3 14.2 1.0
C A:VAL120 4.3 11.6 1.0
O A:VAL120 4.4 11.3 1.0
CA A:SER24 4.5 9.3 1.0
CG1 A:ILE124 4.5 16.4 1.0
CD A:GLN121 4.6 16.0 0.2
C A:GLY26 4.6 7.8 1.0
CA A:LEU25 4.6 9.2 1.0
OE1 A:GLN121 4.6 25.8 0.2
N A:ASN27 4.7 7.7 1.0
O A:SER24 4.8 9.1 1.0
C A:GLN121 4.8 13.2 1.0
CB A:LEU25 4.9 10.1 1.0
O A:HOH2043 5.0 22.6 1.0

Chlorine binding site 2 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 2 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1135

b:20.8
occ:1.00
O A:HOH2081 3.1 12.6 1.0
N A:THR69 3.2 12.9 1.0
O A:THR69 3.3 14.9 1.0
O A:HOH2082 3.5 38.4 1.0
N A:ARG68 3.5 14.8 1.0
OD1 A:ASN65 3.5 16.9 1.0
C A:THR69 3.5 15.3 1.0
C A:GLY67 3.6 15.4 1.0
CA A:GLY67 3.6 14.5 1.0
N A:GLY67 3.6 11.3 1.0
CA A:THR69 3.8 14.8 1.0
OG A:SER72 3.9 14.7 1.0
O A:HOH2083 4.0 16.9 1.0
N A:PRO70 4.2 18.0 1.0
CB A:THR69 4.2 11.9 1.0
C A:ARG68 4.2 16.6 1.0
OD1 A:ASP66 4.2 9.5 1.0
O A:GLY67 4.2 18.5 1.0
CA A:ARG68 4.3 17.3 0.5
CA A:ARG68 4.4 14.2 0.5
CA A:PRO70 4.6 18.9 1.0
C A:ASP66 4.7 11.6 1.0
CG A:ASN65 4.7 14.2 1.0
NA A:NA1143 4.7 13.5 1.0
N A:ASP66 4.8 10.0 1.0
OG1 A:THR69 4.8 10.8 1.0
O A:HOH2087 5.0 28.3 1.0

Chlorine binding site 3 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 3 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1136

b:18.4
occ:0.80
O A:HOH2031 2.9 23.2 1.0
O A:HOH2043 2.9 22.6 1.0
N A:SER24 2.9 10.0 1.0
O A:GLY22 3.1 11.0 1.0
ND2 A:ASN27 3.3 10.2 1.0
OG A:SER24 3.3 12.5 1.0
O A:HOH2046 3.4 17.0 1.0
CB A:SER24 3.4 12.2 1.0
CA A:TYR23 3.7 9.2 1.0
CA A:SER24 3.8 9.3 1.0
C A:TYR23 3.8 8.4 1.0
C A:GLY22 4.1 9.4 1.0
N A:TYR23 4.4 8.8 1.0
CG A:ASN27 4.5 8.6 1.0
OD1 A:ASN19 4.7 16.9 0.5
CB A:TYR23 4.9 8.0 1.0
C A:SER24 4.9 9.6 1.0
O A:TYR23 5.0 9.5 1.0

Chlorine binding site 4 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 4 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1137

b:23.5
occ:0.90
O A:HOH2024 2.6 29.9 1.0
N A:ILE88 3.3 10.2 1.0
O A:HOH2008 3.5 24.3 1.0
CG1 A:ILE88 3.7 12.0 1.0
CA A:ASP87 3.9 12.6 1.0
O A:SER86 3.9 16.2 1.0
CZ A:PHE3 4.0 12.2 1.0
NH2 A:ARG14 4.0 19.7 1.0
C A:ASP87 4.1 12.0 1.0
CB A:ALA11 4.2 10.5 1.0
CG2 A:ILE88 4.2 13.0 1.0
OD1 A:ASP87 4.2 15.7 1.0
CB A:ILE88 4.2 10.1 1.0
CA A:ILE88 4.3 9.9 1.0
NE2 A:HIS15 4.4 15.8 1.0
CE2 A:PHE3 4.5 10.5 1.0
CD1 A:ILE88 4.5 13.2 1.0
CG A:ASP87 4.7 17.1 1.0
C A:SER86 4.8 13.9 1.0
N A:ASP87 4.8 11.5 1.0
CB A:ASP87 4.8 13.8 1.0
CD2 A:HIS15 4.9 15.4 1.0

Chlorine binding site 5 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 5 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1138

b:26.3
occ:0.70
NH1 A:ARG68 2.8 14.4 0.5
NH1 A:ARG68 2.8 9.8 0.5
CD A:ARG68 3.4 10.1 0.5
CD A:ARG68 3.8 12.9 0.5
CZ A:ARG68 3.9 9.1 0.5
CZ A:ARG68 3.9 14.2 0.5
NE A:ARG68 4.1 9.6 0.5
NE A:ARG68 4.2 14.9 0.5
CG A:ARG68 4.7 13.9 0.5
CB A:ARG68 4.8 13.6 0.5
CG A:ARG68 4.8 14.6 0.5
CB A:ARG68 4.8 16.9 0.5
NH1 A:ARG45 4.9 17.9 0.5

Chlorine binding site 6 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 6 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1139

b:23.7
occ:0.90
O A:HOH2127 2.8 16.5 1.0
OD1 A:ASN27 2.8 8.6 1.0
O A:HOH2046 3.2 17.0 1.0
N A:GLY117 3.4 13.2 1.0
CZ2 A:TRP111 3.6 8.9 1.0
CA A:LYS116 3.6 9.8 1.0
CG A:ASN27 3.8 8.6 1.0
O A:CYS115 4.0 8.8 1.0
C A:LYS116 4.0 10.5 1.0
ND2 A:ASN27 4.1 10.2 1.0
CE2 A:TRP111 4.2 8.1 1.0
NE1 A:TRP111 4.3 8.4 1.0
CG1 A:VAL120 4.3 13.0 1.0
N A:LYS116 4.4 8.9 1.0
C A:CYS115 4.5 8.6 1.0
CH2 A:TRP111 4.5 9.8 1.0
CA A:GLY117 4.5 17.3 1.0
CB A:LYS116 4.6 9.8 1.0
CG A:LYS116 4.6 10.6 1.0
CG2 A:VAL120 4.8 14.2 1.0
N A:THR118 4.9 13.1 1.0
O A:THR118 4.9 12.5 1.0

Chlorine binding site 7 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 7 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1140

b:33.2
occ:0.95
ND2 A:ASN74 3.1 13.2 1.0
O A:HOH2085 3.1 16.3 1.0
C A:ILE78 3.3 11.6 1.0
N A:PRO79 3.5 10.8 1.0
CA A:ILE78 3.6 11.9 1.0
N A:ILE78 3.6 11.9 1.0
O A:ILE78 3.7 11.4 1.0
C A:ASN77 3.9 13.8 1.0
CD A:PRO79 4.0 11.9 1.0
O A:ASN77 4.1 14.0 1.0
CG A:ASN74 4.2 10.8 1.0
CA A:PRO79 4.3 11.2 1.0
OD1 A:ASN77 4.3 21.9 1.0
CB A:ASN65 4.4 12.0 1.0
OD1 A:ASN74 4.5 11.6 1.0
O A:HOH2092 4.6 28.4 1.0
CA A:ASN77 4.7 11.3 1.0
CB A:PRO79 4.9 10.8 1.0
CG A:PRO79 4.9 17.7 1.0

Chlorine binding site 8 out of 8 in 4bap

Go back to Chlorine Binding Sites List in 4bap
Chlorine binding site 8 out of 8 in the Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Hen Egg-White Lysozyme Structure in Complex with the Europium Tris- Hydroxyethylcholinetriazoledipicolinate Complex at 1.21 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1141

b:13.5
occ:1.00
OH A:TYR23 3.0 9.1 1.0
O A:HOH2036 3.2 27.7 1.0
O A:HOH2035 3.3 12.6 1.0
CZ A:TYR23 3.7 8.2 1.0
CE2 A:TYR23 3.7 8.5 1.0
CA A:GLY104 4.2 10.7 1.0
O A:ARG21 4.6 11.9 1.0
O A:HOH2017 4.8 28.6 1.0
N A:GLY104 4.8 11.1 1.0
CE1 A:TYR23 4.9 8.6 1.0
CD2 A:TYR23 4.9 7.8 1.0

Reference:

R.Talon, L.Nauton, J.-L.Canet, R.Kahn, E.Girard, A.Gautier. Clicked Europium Dipicolinate Complexes For Protein X-Ray Structure Determination. Chem.Commun.(Camb.) V. 48 11886 2012.
ISSN: ISSN 1359-7345
PubMed: 23123834
DOI: 10.1039/C2CC36982F
Page generated: Sat Dec 12 10:25:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy