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Chlorine in PDB 4brm: Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate

Enzymatic activity of Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate

All present enzymatic activity of Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate:
3.6.1.5;

Protein crystallography data

The structure of Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate, PDB code: 4brm was solved by M.Zebisch, P.Schaefer, P.Lauble, N.Straeter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.53 / 2.02
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.966, 84.314, 102.108, 90.00, 90.00, 90.00
R / Rfree (%) 16.105 / 21.639

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate (pdb code 4brm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate, PDB code: 4brm:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4brm

Go back to Chlorine Binding Sites List in 4brm
Chlorine binding site 1 out of 2 in the Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1398

b:27.4
occ:1.00
O B:HOH2040 3.0 17.6 1.0
ND2 A:ASN240 3.3 15.7 1.0
O A:HOH2137 3.4 28.7 1.0
NE B:ARG122 3.8 21.4 1.0
N A:ASP253 3.8 16.2 1.0
CA A:ASP253 3.8 17.4 1.0
CB A:ASP253 3.9 17.0 1.0
C A:PRO252 4.0 16.4 1.0
CD B:ARG122 4.0 19.8 1.0
CB B:LEU227 4.0 13.7 1.0
O A:PRO252 4.1 16.6 1.0
CD2 B:LEU227 4.1 14.5 1.0
CB A:PRO252 4.2 15.7 1.0
CG A:ASN240 4.2 15.7 1.0
OD1 A:ASN240 4.3 15.5 1.0
CG A:PRO252 4.6 14.8 1.0
CG B:LEU227 4.6 13.7 1.0
CZ B:ARG122 4.7 18.8 1.0
CA A:PRO252 4.7 15.6 1.0
O B:SER225 4.7 17.8 1.0
CD1 B:LEU227 4.9 13.7 1.0
NH2 B:ARG122 4.9 17.6 1.0
OG B:SER225 4.9 15.5 1.0
N B:GLY156 4.9 19.5 1.0
N B:LEU227 5.0 13.3 1.0
O3 B:SO41395 5.0 19.2 0.5
CB B:ARG122 5.0 17.5 1.0

Chlorine binding site 2 out of 2 in 4brm

Go back to Chlorine Binding Sites List in 4brm
Chlorine binding site 2 out of 2 in the Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sulfur Sad Phasing of the Legionella Pneumophila NTPDASE1 - Crystal Form III (Closed) in Complex with Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1393

b:24.1
occ:0.50
OD1 B:ASP253 1.7 19.6 0.5
CG B:ASP253 2.5 20.8 0.5
NE A:ARG122 3.0 16.1 1.0
O A:HOH2063 3.0 16.7 1.0
OD2 B:ASP253 3.2 21.9 0.5
ND2 B:ASN240 3.2 15.9 1.0
CD A:ARG122 3.5 16.8 1.0
CB B:ASP253 3.6 20.7 0.5
CB B:PRO252 3.8 18.2 1.0
N B:ASP253 3.8 19.8 1.0
CG A:LEU227 3.9 14.5 1.0
C B:PRO252 3.9 19.6 1.0
CZ A:ARG122 4.0 16.2 1.0
CA B:ASP253 4.0 21.0 0.5
CA B:ASP253 4.1 20.9 0.5
N A:GLY156 4.1 14.4 1.0
CB B:ASP253 4.1 20.1 0.5
CG B:ASN240 4.1 15.7 1.0
CD1 A:LEU227 4.1 14.0 1.0
OD1 B:ASN240 4.2 15.8 1.0
O B:PRO252 4.2 20.2 1.0
NH2 A:ARG122 4.2 15.2 1.0
CD2 A:LEU227 4.3 13.4 1.0
CA A:GLY156 4.5 14.2 1.0
CA B:PRO252 4.5 18.1 1.0
CG A:ARG122 4.6 15.7 1.0
CB A:ARG122 4.6 15.5 1.0
CG B:PRO252 4.9 17.5 1.0
O2 A:SO41397 4.9 20.4 1.0
OG A:SER225 5.0 13.6 1.0

Reference:

M.Zebisch, M.Krauss, P.Schaefer, P.Lauble, N.Straeter. Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure V. 21 1460 2013.
ISSN: ISSN 0969-2126
PubMed: 23830739
DOI: 10.1016/J.STR.2013.05.016
Page generated: Sat Dec 12 10:27:23 2020

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