Chlorine in PDB 4c0r: Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Protein crystallography data
The structure of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans., PDB code: 4c0r
was solved by
B.Vergauwen,
K.Verstraete,
D.B.Senadheera,
A.Dansercoer,
D.G.Cvitkovitch,
E.Guedon,
S.N.Savvides,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.010 /
1.55
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.040,
103.120,
64.090,
90.00,
92.31,
90.00
|
R / Rfree (%)
|
15.54 /
18.31
|
Other elements in 4c0r:
The structure of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
(pdb code 4c0r). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans., PDB code: 4c0r:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 1 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1258
b:16.1
occ:1.00
|
CD
|
A:CD1240
|
2.5
|
10.9
|
0.9
|
CD
|
A:CD1241
|
2.5
|
14.9
|
0.9
|
HA
|
A:ASP40
|
2.9
|
17.3
|
1.0
|
O
|
A:HOH2077
|
3.1
|
22.4
|
1.0
|
O
|
A:HOH2005
|
3.1
|
15.3
|
1.0
|
OD2
|
A:ASP2
|
3.1
|
16.8
|
1.0
|
O
|
A:HOH2007
|
3.5
|
13.9
|
1.0
|
O
|
A:ASP40
|
3.7
|
16.8
|
1.0
|
CL
|
A:CL1259
|
3.7
|
13.3
|
1.0
|
CA
|
A:ASP40
|
3.8
|
14.4
|
1.0
|
HB2
|
A:ASP40
|
4.1
|
23.9
|
1.0
|
C
|
A:ASP40
|
4.1
|
13.4
|
1.0
|
CG
|
A:ASP2
|
4.2
|
15.4
|
1.0
|
O
|
A:HOH2078
|
4.3
|
15.6
|
1.0
|
O
|
A:SER39
|
4.3
|
14.2
|
1.0
|
OD1
|
A:ASP2
|
4.4
|
17.6
|
1.0
|
CB
|
A:ASP40
|
4.4
|
19.9
|
1.0
|
HB3
|
A:ASP40
|
4.7
|
23.9
|
1.0
|
OD1
|
A:ASP43
|
4.7
|
13.8
|
1.0
|
N
|
A:ASP40
|
4.9
|
14.8
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 2 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1259
b:13.3
occ:1.00
|
CD
|
A:CD1240
|
2.5
|
10.9
|
0.9
|
O
|
A:HOH2001
|
3.0
|
15.9
|
1.0
|
OD1
|
A:ASP43
|
3.5
|
13.8
|
1.0
|
O
|
A:HOH2084
|
3.6
|
14.4
|
1.0
|
O
|
A:HOH2007
|
3.7
|
13.9
|
1.0
|
CL
|
A:CL1258
|
3.7
|
16.1
|
1.0
|
CG
|
A:ASP43
|
4.5
|
13.9
|
1.0
|
O
|
A:HOH2077
|
4.6
|
22.4
|
1.0
|
OD2
|
A:ASP2
|
4.8
|
16.8
|
1.0
|
OD2
|
A:ASP43
|
4.8
|
12.9
|
1.0
|
O
|
A:HOH2074
|
5.0
|
12.6
|
1.0
|
O
|
A:HOH2023
|
5.0
|
16.9
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 3 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1260
b:19.9
occ:1.00
|
CD
|
B:CD1242
|
2.5
|
15.3
|
0.9
|
CD
|
B:CD1243
|
2.6
|
15.2
|
0.8
|
HE3
|
A:LYS48
|
3.0
|
24.6
|
1.0
|
O
|
A:HOH2104
|
3.1
|
19.4
|
1.0
|
HB2
|
B:HIS147
|
3.2
|
13.2
|
1.0
|
CL
|
B:CL1253
|
3.4
|
19.9
|
1.0
|
OE1
|
A:GLU19
|
3.5
|
15.5
|
1.0
|
O
|
B:HOH2204
|
3.5
|
18.9
|
1.0
|
HZ3
|
A:LYS48
|
3.5
|
34.4
|
1.0
|
HD3
|
A:LYS48
|
3.6
|
22.0
|
1.0
|
ND1
|
B:HIS147
|
3.6
|
16.4
|
1.0
|
OD2
|
B:ASP144
|
3.6
|
15.8
|
1.0
|
OE2
|
A:GLU19
|
3.7
|
14.5
|
1.0
|
CE
|
A:LYS48
|
3.7
|
20.5
|
1.0
|
CD
|
A:GLU19
|
3.8
|
16.1
|
1.0
|
OD1
|
B:ASP144
|
3.9
|
12.4
|
1.0
|
O
|
A:HOH2035
|
4.0
|
26.2
|
1.0
|
NZ
|
A:LYS48
|
4.0
|
28.6
|
1.0
|
CD
|
A:LYS48
|
4.0
|
18.4
|
1.0
|
CG
|
B:ASP144
|
4.0
|
13.2
|
1.0
|
CB
|
B:HIS147
|
4.1
|
11.0
|
1.0
|
HD2
|
A:LYS48
|
4.1
|
22.0
|
1.0
|
CG
|
B:HIS147
|
4.2
|
15.6
|
1.0
|
HZ2
|
A:LYS48
|
4.2
|
34.4
|
1.0
|
O
|
B:HOH2205
|
4.4
|
30.6
|
1.0
|
O
|
A:HOH2105
|
4.5
|
25.8
|
1.0
|
H
|
B:ASP144
|
4.5
|
14.5
|
1.0
|
CE1
|
B:HIS147
|
4.6
|
15.1
|
1.0
|
HB3
|
B:HIS147
|
4.6
|
13.2
|
1.0
|
HE2
|
A:LYS48
|
4.6
|
24.6
|
1.0
|
HB3
|
B:GLU143
|
4.8
|
20.6
|
1.0
|
HE1
|
B:HIS147
|
4.8
|
18.1
|
1.0
|
HZ1
|
A:LYS48
|
4.8
|
34.4
|
1.0
|
OE1
|
B:GLU143
|
4.9
|
23.8
|
1.0
|
O
|
A:HOH2036
|
4.9
|
18.4
|
1.0
|
HA
|
B:HIS147
|
4.9
|
13.2
|
1.0
|
HG3
|
A:GLU19
|
5.0
|
14.3
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 4 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1261
b:29.7
occ:1.00
|
O
|
A:HOH2351
|
2.3
|
44.4
|
1.0
|
CD
|
A:CD1242
|
2.5
|
15.2
|
0.8
|
HD2
|
A:HIS110
|
2.8
|
18.3
|
1.0
|
O
|
A:HOH2180
|
3.1
|
32.4
|
1.0
|
CD2
|
A:HIS110
|
3.4
|
15.3
|
1.0
|
HB3
|
A:ASP158
|
3.5
|
16.9
|
1.0
|
NE2
|
A:HIS110
|
3.5
|
11.9
|
1.0
|
O
|
A:HOH2257
|
3.5
|
31.9
|
1.0
|
OD1
|
A:ASP158
|
3.8
|
17.7
|
1.0
|
OD1
|
A:ASP100
|
3.8
|
18.5
|
1.0
|
CG
|
A:ASP158
|
3.9
|
17.0
|
1.0
|
O
|
A:HOH2181
|
4.0
|
11.5
|
1.0
|
CB
|
A:ASP158
|
4.2
|
14.1
|
1.0
|
CD
|
A:CD1249
|
4.3
|
51.2
|
0.7
|
HD12
|
A:ILE101
|
4.3
|
19.2
|
1.0
|
OD2
|
A:ASP158
|
4.4
|
15.1
|
1.0
|
HA
|
A:ASP158
|
4.5
|
13.5
|
1.0
|
HG13
|
A:ILE101
|
4.6
|
19.5
|
1.0
|
HD13
|
A:ILE101
|
4.7
|
19.2
|
1.0
|
CG
|
A:HIS110
|
4.7
|
13.6
|
1.0
|
CG
|
A:ASP100
|
4.8
|
15.2
|
1.0
|
CE1
|
A:HIS110
|
4.8
|
15.2
|
1.0
|
HG
|
A:SER99
|
4.8
|
19.7
|
1.0
|
OG
|
A:SER99
|
4.8
|
16.4
|
1.0
|
HB2
|
A:ASP158
|
4.9
|
16.9
|
1.0
|
CD1
|
A:ILE101
|
4.9
|
16.0
|
1.0
|
CA
|
A:ASP158
|
5.0
|
11.2
|
1.0
|
O
|
A:HOH2258
|
5.0
|
35.0
|
1.0
|
OD2
|
A:ASP100
|
5.0
|
9.2
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 5 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1262
b:15.3
occ:1.00
|
CD
|
A:CD1243
|
2.1
|
19.9
|
0.8
|
O
|
A:HOH2242
|
2.4
|
24.8
|
1.0
|
CD
|
A:CD1245
|
2.8
|
19.1
|
0.8
|
HB2
|
A:HIS147
|
3.0
|
21.0
|
1.0
|
OE1
|
B:GLU19
|
3.2
|
18.0
|
1.0
|
O
|
A:HOH2243
|
3.2
|
11.1
|
1.0
|
OE2
|
B:GLU19
|
3.2
|
17.6
|
1.0
|
ND1
|
A:HIS147
|
3.4
|
22.2
|
1.0
|
CD
|
B:GLU19
|
3.4
|
19.7
|
1.0
|
O
|
A:HOH2116
|
3.5
|
30.7
|
1.0
|
O
|
A:HOH2347
|
3.7
|
28.2
|
1.0
|
CB
|
A:HIS147
|
3.9
|
17.5
|
1.0
|
OD2
|
A:ASP144
|
3.9
|
19.1
|
1.0
|
CG
|
A:HIS147
|
3.9
|
18.8
|
1.0
|
OD1
|
A:ASP144
|
4.0
|
13.1
|
1.0
|
CE
|
B:LYS48
|
4.0
|
23.2
|
1.0
|
CG
|
A:ASP144
|
4.2
|
12.5
|
1.0
|
HD3
|
B:LYS48
|
4.2
|
29.4
|
1.0
|
CE1
|
A:HIS147
|
4.3
|
20.2
|
1.0
|
O
|
A:HOH2247
|
4.4
|
26.1
|
1.0
|
H
|
A:ASP144
|
4.5
|
16.9
|
1.0
|
HB3
|
A:HIS147
|
4.5
|
21.0
|
1.0
|
HE1
|
A:HIS147
|
4.6
|
24.3
|
1.0
|
CD
|
B:LYS48
|
4.6
|
24.5
|
1.0
|
HG3
|
B:GLU19
|
4.6
|
20.9
|
1.0
|
HA
|
A:HIS147
|
4.6
|
15.2
|
1.0
|
CG
|
B:GLU19
|
4.6
|
17.4
|
1.0
|
HD2
|
B:LYS48
|
4.6
|
29.4
|
1.0
|
CA
|
A:HIS147
|
4.8
|
12.6
|
1.0
|
HB3
|
A:GLU143
|
4.8
|
26.5
|
1.0
|
H
|
A:HIS147
|
4.8
|
15.3
|
1.0
|
OE1
|
A:GLU143
|
4.9
|
31.6
|
1.0
|
O
|
A:HOH2241
|
4.9
|
42.2
|
1.0
|
HB2
|
B:GLU19
|
5.0
|
20.3
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4c0r
Go back to
Chlorine Binding Sites List in 4c0r
Chlorine binding site 6 out
of 6 in the Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1253
b:19.9
occ:1.00
|
HH12
|
B:ARG150
|
2.2
|
18.1
|
0.4
|
CD
|
B:CD1243
|
2.6
|
15.2
|
0.8
|
CD
|
B:CD1242
|
2.6
|
15.3
|
0.9
|
NH1
|
B:ARG150
|
2.9
|
15.1
|
0.4
|
HB2
|
B:HIS147
|
3.1
|
13.2
|
1.0
|
HA
|
B:HIS147
|
3.1
|
13.2
|
1.0
|
HB1
|
B:ALA146
|
3.2
|
15.1
|
1.0
|
HH11
|
B:ARG150
|
3.3
|
18.1
|
0.4
|
CL
|
A:CL1260
|
3.4
|
19.9
|
1.0
|
HH22
|
B:ARG150
|
3.4
|
18.1
|
0.4
|
N
|
B:HIS147
|
3.5
|
12.9
|
1.0
|
O
|
A:HOH2036
|
3.5
|
18.4
|
1.0
|
CA
|
B:HIS147
|
3.6
|
11.0
|
1.0
|
H
|
B:HIS147
|
3.6
|
15.4
|
1.0
|
HB2
|
B:ALA146
|
3.7
|
15.1
|
1.0
|
OD1
|
B:ASP144
|
3.7
|
12.4
|
1.0
|
CB
|
B:HIS147
|
3.7
|
11.0
|
1.0
|
C
|
B:ALA146
|
3.8
|
9.9
|
1.0
|
OE1
|
A:GLU19
|
3.8
|
15.5
|
1.0
|
CB
|
B:ALA146
|
3.8
|
12.6
|
1.0
|
CZ
|
B:ARG150
|
3.8
|
15.1
|
0.4
|
O
|
B:HOH2202
|
3.9
|
14.1
|
1.0
|
NH2
|
B:ARG150
|
3.9
|
15.1
|
0.4
|
O
|
A:HOH2035
|
4.0
|
26.2
|
1.0
|
O
|
B:HOH2204
|
4.1
|
18.9
|
1.0
|
ND1
|
B:HIS147
|
4.2
|
16.4
|
1.0
|
HE
|
B:ARG150
|
4.2
|
18.1
|
0.6
|
O
|
B:ALA146
|
4.3
|
11.9
|
1.0
|
O
|
B:HOH2002
|
4.3
|
32.2
|
1.0
|
HA2
|
A:GLY22
|
4.4
|
19.3
|
1.0
|
CA
|
B:ALA146
|
4.4
|
11.8
|
1.0
|
CG
|
B:HIS147
|
4.4
|
15.6
|
1.0
|
HB3
|
B:HIS147
|
4.5
|
13.2
|
1.0
|
CG
|
B:ASP144
|
4.6
|
13.2
|
1.0
|
OD2
|
B:ASP144
|
4.6
|
15.8
|
1.0
|
HB3
|
B:ALA146
|
4.6
|
15.1
|
1.0
|
HH21
|
B:ARG150
|
4.7
|
18.1
|
0.4
|
CD
|
A:GLU19
|
4.8
|
16.1
|
1.0
|
OE2
|
A:GLU19
|
4.9
|
14.5
|
1.0
|
HH21
|
B:ARG150
|
5.0
|
18.1
|
0.6
|
|
Reference:
B.Vergauwen,
K.Verstraete,
D.B.Senadheera,
A.Dansercoer,
D.G.Cvitkovitch,
E.Guedon,
S.N.Savvides.
Molecular and Structural Basis of Glutathione Import in Gram-Positive Bacteria Via Gsht and the Cystine Abc Importer Tcybc of Streptococcus Mutans. Mol.Microbiol. V. 89 288 2013.
ISSN: ISSN 0950-382X
PubMed: 23701283
DOI: 10.1111/MMI.12274
Page generated: Sun Jul 21 10:41:43 2024
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