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Chlorine in PDB 4c3o: Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella

Enzymatic activity of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella

All present enzymatic activity of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella:
1.12.7.2;

Protein crystallography data

The structure of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella, PDB code: 4c3o was solved by L.Bowman, L.Flanagan, P.K.Fyfe, A.Parkin, W.N.Hunter, F.Sargent, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.52 / 3.20
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.460, 122.210, 227.820, 90.00, 95.56, 90.00
R / Rfree (%) 15.811 / 20.467

Other elements in 4c3o:

The structure of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella also contains other interesting chemical elements:

Nickel (Ni) 3 atoms
Magnesium (Mg) 3 atoms
Iron (Fe) 36 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella (pdb code 4c3o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella, PDB code: 4c3o:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4c3o

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Chlorine binding site 1 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1586

b:95.2
occ:1.00
 NH1 A:ARG172 3.0 0.3 1.0
NE A:ARG169 3.3 90.2 1.0
OG B:SER38 3.4 75.4 1.0
NH2 A:ARG172 3.6 0.5 1.0
CG A:ARG169 3.7 86.7 1.0
CZ A:ARG172 3.8 0.7 1.0
CD A:ARG169 3.9 88.9 1.0
CZ A:ARG169 4.2 87.0 1.0
NH2 A:ARG169 4.4 90.8 1.0
CB B:SER38 4.7 71.3 1.0
CB A:ARG169 4.8 86.3 1.0

Chlorine binding site 2 out of 6 in 4c3o

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Chlorine binding site 2 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1587

b:83.9
occ:1.00
 NH2 A:ARG323 3.3 0.5 1.0
NH1 A:ARG323 3.8 0.2 1.0
CZ A:ARG323 4.0 99.4 1.0
CG A:LEU339 4.3 98.0 1.0
CD1 A:LEU339 4.3 94.8 1.0
N A:LEU339 4.4 0.6 1.0
CB A:LEU339 4.4 97.7 1.0
CE1 A:PHE507 4.7 81.0 1.0
CD1 A:PHE507 4.9 81.9 1.0

Chlorine binding site 3 out of 6 in 4c3o

Go back to Chlorine Binding Sites List in 4c3o
Chlorine binding site 3 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1588

b:50.9
occ:1.00
 NZ A:LYS266 3.0 0.5 1.0
NZ C:LYS214 3.2 66.2 1.0
CE A:LYS266 4.3 91.1 1.0
CD2 D:LEU31 4.4 77.0 1.0
CE C:LYS214 4.5 67.5 1.0
CD1 D:LEU31 4.7 76.5 1.0

Chlorine binding site 4 out of 6 in 4c3o

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Chlorine binding site 4 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1590

b:52.9
occ:1.00
 NZ C:LYS266 3.1 93.8 1.0
NZ A:LYS214 3.2 60.2 1.0
CD2 B:LEU31 4.3 60.7 1.0
CE C:LYS266 4.4 88.8 1.0
CE A:LYS214 4.4 59.7 1.0
CD1 B:LEU31 4.6 63.2 1.0
CG B:LEU31 4.9 63.3 1.0

Chlorine binding site 5 out of 6 in 4c3o

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Chlorine binding site 5 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1586

b:94.0
occ:1.00
 OG F:SER38 3.2 0.6 1.0
NH2 E:ARG172 3.3 0.9 1.0
NE E:ARG169 3.9 0.6 1.0
CB F:SER38 4.4 95.8 1.0
NH2 E:ARG169 4.4 0.1 1.0
CZ E:ARG172 4.4 0.2 1.0
CZ E:ARG169 4.6 98.2 1.0
CD E:ARG169 4.7 0.6 1.0
CG E:ARG169 4.7 0.8 1.0
NE E:ARG172 4.8 0.1 1.0

Chlorine binding site 6 out of 6 in 4c3o

Go back to Chlorine Binding Sites List in 4c3o
Chlorine binding site 6 out of 6 in the Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure and Function of An Oxygen Tolerant Nife Hydrogenase From Salmonella within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1587

b:51.4
occ:1.00
 NZ E:LYS214 3.3 67.7 1.0
CD2 F:LEU31 4.5 80.0 1.0
CE E:LYS214 4.6 67.0 1.0
CD1 F:LEU31 4.8 75.8 1.0

Reference:

L.Bowman, L.Flanagan, P.K.Fyfe, A.Parkin, W.N.Hunter, F.Sargent. How the Structure of the Large Subunit Controls Function in An Oxygen-Tolerant [Nife]-Hydrogenase. Biochem.J. V. 458 449 2014.
ISSN: ISSN 0264-6021
PubMed: 24428762
DOI: 10.1042/BJ20131520
Page generated: Sun Jul 21 10:46:38 2024

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