Atomistry » Chlorine » PDB 4c00-4c81 » 4c7y
Atomistry »
  Chlorine »
    PDB 4c00-4c81 »
      4c7y »

Chlorine in PDB 4c7y: Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide

Enzymatic activity of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide

All present enzymatic activity of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide:
1.2.99.7;

Protein crystallography data

The structure of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide, PDB code: 4c7y was solved by H.D.Correia, M.J.Romao, T.Santos-Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 124.06 / 1.57
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.250, 143.250, 162.300, 90.00, 90.00, 120.00
R / Rfree (%) 13.44 / 15.792

Other elements in 4c7y:

The structure of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide also contains other interesting chemical elements:

Molybdenum (Mo) 1 atom
Magnesium (Mg) 3 atoms
Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide (pdb code 4c7y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide, PDB code: 4c7y:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4c7y

Go back to Chlorine Binding Sites List in 4c7y
Chlorine binding site 1 out of 2 in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl918

b:14.1
occ:1.00
O A:HOH2627 3.2 23.4 1.0
O A:HOH2694 3.3 25.2 1.0
N A:GLU899 3.3 10.3 1.0
CD A:PRO898 3.7 10.4 1.0
CB A:GLU899 3.8 10.4 1.0
N A:PRO898 3.8 10.0 1.0
CB A:TYR897 3.9 10.5 1.0
CA A:GLU899 4.1 10.4 1.0
CB A:PRO898 4.2 11.2 1.0
C A:PRO898 4.3 10.8 1.0
CA A:PRO898 4.3 10.8 1.0
CG A:PRO898 4.3 11.3 1.0
C A:TYR897 4.4 9.9 1.0
CA A:TYR897 4.6 9.4 1.0
CG A:TYR897 4.7 11.3 1.0
O A:HOH3125 4.8 30.8 1.0
OE1 A:GLU899 4.9 12.2 1.0
CD1 A:TYR897 4.9 12.1 1.0
O A:HOH2650 5.0 21.9 1.0

Chlorine binding site 2 out of 2 in 4c7y

Go back to Chlorine Binding Sites List in 4c7y
Chlorine binding site 2 out of 2 in the Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Aldehyde Oxidoreductase From Desulfovibrio Gigas (Mop), Soaked with Sodium Dithionite and Sodium Sulfide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl920

b:15.6
occ:1.00
O A:HOH2685 3.0 25.9 1.0
O A:HOH2326 3.1 21.3 1.0
N A:TYR892 3.2 9.0 1.0
O A:HOH2688 3.3 25.4 1.0
N A:ARG893 3.4 8.7 1.0
CA A:TYR892 3.9 9.0 1.0
CB A:TYR892 4.0 9.6 1.0
CG A:ARG893 4.0 9.4 1.0
CB A:ARG893 4.0 8.4 1.0
CA A:ILE891 4.1 10.4 1.0
C A:ILE891 4.1 9.4 1.0
C A:TYR892 4.1 8.6 1.0
CG2 A:ILE891 4.1 11.6 1.0
CA A:ARG893 4.2 8.5 1.0
O A:ARG893 4.3 9.2 1.0
CD A:LYS900 4.3 14.6 1.0
CD2 A:TYR892 4.4 11.1 1.0
O A:HOH3198 4.4 21.2 1.0
CD A:ARG893 4.6 9.4 1.0
CB A:ILE891 4.7 10.7 1.0
CD1 A:ILE891 4.7 15.5 1.0
C A:ARG893 4.7 8.4 1.0
CG A:TYR892 4.7 10.2 1.0
CG A:LYS900 4.7 13.7 1.0
O A:HOH3203 4.7 38.4 1.0
O A:ARG890 4.8 12.1 1.0
O A:HOH3211 5.0 14.1 1.0
O A:HOH2699 5.0 39.3 1.0

Reference:

J.Marangon, H.D.Correia, C.D.Brondino, J.J.G.Moura, M.J.Romao, P.J.Gonzalez, T.Santos-Silva. Kinetic and Structural Studies of Aldehyde Oxidoreductase From Desulfovibrio Gigas Reveal A Dithiolene-Based Chemistry For Enzyme Activation and Inhibition By H2O2. Plos One V. 8 83234 2013.
ISSN: ISSN 1932-6203
PubMed: 24391748
DOI: 10.1371/JOURNAL.PONE.0083234
Page generated: Sat Dec 12 10:28:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy