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Chlorine in PDB 4c8o: Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2)

Enzymatic activity of Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2)

All present enzymatic activity of Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2):
2.7.7.7;

Protein crystallography data

The structure of Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2), PDB code: 4c8o was solved by K.Betz, D.A.Malyshev, T.Lavergne, W.Welte, K.Diederichs, F.E.Romesberg, A.Marx, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.876 / 1.75
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 64.802, 99.185, 203.602, 90.00, 90.00, 90.00
R / Rfree (%) 18.46 / 21.22

Other elements in 4c8o:

The structure of Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2) (pdb code 4c8o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2), PDB code: 4c8o:

Chlorine binding site 1 out of 1 in 4c8o

Go back to Chlorine Binding Sites List in 4c8o
Chlorine binding site 1 out of 1 in the Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Binary Complex of the Large Fragment of Dna Polymerase I From Thermus Aquaticus with the Aritificial Base Pair Dnam- D5SICS at the Postinsertion Site (Sequence Context 2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1836

b:74.4
occ:1.00
 H A:LYS314 2.4 58.9 1.0
HB3 A:LYS314 3.0 64.3 1.0
HA A:ARG313 3.1 58.6 1.0
N A:LYS314 3.2 49.1 1.0
HD3 A:LYS314 3.3 73.6 1.0
HG2 A:LYS314 3.3 68.1 1.0
HB2 A:ARG313 3.6 57.5 1.0
CB A:LYS314 3.7 53.6 1.0
CG A:LYS314 3.8 56.8 1.0
CA A:ARG313 3.8 48.8 1.0
CD A:LYS314 3.9 61.3 1.0
C A:ARG313 4.0 47.8 1.0
CA A:LYS314 4.0 52.6 1.0
CB A:ARG313 4.1 47.9 1.0
HE2 A:LYS314 4.1 75.7 1.0
HB3 A:ARG313 4.3 57.5 1.0
HA A:LYS314 4.5 63.1 1.0
HB2 A:LYS314 4.5 64.3 1.0
CE A:LYS314 4.6 63.1 1.0
HZ1 A:LYS314 4.7 78.2 1.0
HG3 A:LYS314 4.7 68.1 1.0
HD2 A:LYS314 4.8 73.6 1.0
OE1 A:GLU315 4.8 56.1 1.0
H A:GLU315 4.9 52.5 1.0

Reference:

K.Betz, D.A.Malyshev, T.Lavergne, W.Welte, K.Diederichs, F.E.Romesberg, A.Marx. Structural Insights Into Dna Replication Without Hydrogen Bonds. J.Am.Chem.Soc. V. 135 18637 2013.
ISSN: ISSN 0002-7863
PubMed: 24283923
DOI: 10.1021/JA409609J
Page generated: Sat Dec 12 10:28:41 2020

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