Atomistry » Chlorine » PDB 4d0m-4d9z » 4d3m
Atomistry »
  Chlorine »
    PDB 4d0m-4d9z »
      4d3m »

Chlorine in PDB 4d3m: Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile

Enzymatic activity of Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile

All present enzymatic activity of Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile:
1.14.13.165;

Protein crystallography data

The structure of Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile, PDB code: 4d3m was solved by J.K.Holden, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.662 / 1.74
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.380, 95.697, 63.070, 90.00, 90.00, 90.00
R / Rfree (%) 16.68 / 18.78

Other elements in 4d3m:

The structure of Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile (pdb code 4d3m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile, PDB code: 4d3m:

Chlorine binding site 1 out of 1 in 4d3m

Go back to Chlorine Binding Sites List in 4d3m
Chlorine binding site 1 out of 1 in the Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Bacillus Subtilis Nitric Oxide Synthase in Complex with 3-(2-(6-Amino-4-Methylpyridin-2-Yl)Ethyl)-5-( 2-(4-Methyl-6-(Methylamino)Pyridin-2-Yl)Ethyl)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:24.4
occ:1.00
 OH A:TYR239 2.9 18.4 1.0
NH1 A:ARG247 3.0 25.8 0.5
NE2 A:GLN129 3.1 21.9 1.0
O A:HOH2097 3.2 22.7 1.0
ND2 A:ASN248 3.3 14.9 1.0
N27 A:IVU904 3.5 22.7 1.0
CE1 A:TYR239 3.5 15.6 1.0
C26 A:IVU904 3.5 29.4 1.0
CZ A:TYR239 3.7 17.6 1.0
C15 A:IVU904 3.7 25.8 1.0
OH A:TYR213 3.8 18.6 1.0
OD1 A:ASN248 3.9 17.2 1.0
OE1 A:GLN129 3.9 20.4 1.0
CD A:GLN129 4.0 20.9 1.0
CG A:ASN248 4.0 15.5 1.0
C16 A:IVU904 4.1 28.6 1.0
CZ A:ARG247 4.2 21.2 0.5
NH2 A:ARG247 4.7 12.9 0.5
CB A:PRO216 4.8 17.3 1.0
NE1 A:TRP212 4.8 13.7 1.0
CZ A:TYR213 4.8 16.9 1.0
CD1 A:TYR239 4.8 15.5 1.0
C14 A:IVU904 4.9 27.8 1.0

Reference:

J.K.Holden, S.Kang, S.A.Hollingsworth, H.Li, N.Lim, S.Chen, H.Huang, F.Xue, W.Tang, R.B.Silverman, T.L.Poulos. Structure-Based Design of Bacterial Nitric Oxide Synthase Inhibitors. J.Med.Chem. 2014.
ISSN: ESSN 1520-4804
PubMed: 25522110
DOI: 10.1021/JM501723P
Page generated: Sun Jul 21 11:44:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy