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Chlorine in PDB 4d45: Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile

Enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile

All present enzymatic activity of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile:
1.3.1.10; 1.3.1.39;

Protein crystallography data

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile, PDB code: 4d45 was solved by M.Tareilus, J.Schiebel, A.Chang, P.J.Tonge, C.A.Sotriffer, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.58 / 2.15
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 90.077, 95.168, 95.200, 98.43, 97.53, 111.47
R / Rfree (%) 17.417 / 22.679

Other elements in 4d45:

The structure of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile also contains other interesting chemical elements:

Bromine (Br) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile (pdb code 4d45). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile, PDB code: 4d45:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 4d45

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Chlorine binding site 1 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1258

b:34.1
occ:1.00
CL1 A:J471258 0.0 34.1 1.0
C12 A:J471258 1.7 31.1 1.0
C11 A:J471258 2.7 30.8 1.0
C13 A:J471258 2.7 29.5 1.0
CZ A:TYR147 3.5 33.4 1.0
CE1 A:TYR147 3.6 27.8 1.0
O7N A:NAP1257 3.6 31.8 1.0
CE2 A:TYR147 3.8 25.1 1.0
CE1 A:PHE204 3.8 22.8 1.0
CD1 A:TYR147 3.9 25.6 1.0
OH A:TYR147 4.0 34.5 1.0
C10 A:J471258 4.0 30.3 1.0
C9 A:J471258 4.0 28.7 1.0
C4N A:NAP1257 4.1 29.0 1.0
CD2 A:TYR147 4.1 25.1 1.0
CG A:TYR147 4.2 20.3 1.0
C7N A:NAP1257 4.3 30.0 1.0
CD1 A:PHE204 4.3 26.1 1.0
C3N A:NAP1257 4.3 29.5 1.0
CA A:PRO192 4.4 28.6 1.0
CB A:PRO192 4.4 30.6 1.0
C8 A:J471258 4.5 29.9 1.0
CG2 A:VAL201 4.7 30.0 1.0
CG1 A:VAL201 4.8 32.7 1.0
CE1 A:TYR157 4.8 24.2 1.0
C5N A:NAP1257 4.9 26.0 1.0
CZ A:PHE204 5.0 25.3 1.0
N A:PRO192 5.0 29.8 1.0

Chlorine binding site 2 out of 8 in 4d45

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Chlorine binding site 2 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1258

b:33.2
occ:1.00
CL1 B:J471258 0.0 33.2 1.0
C12 B:J471258 1.7 34.6 1.0
C13 B:J471258 2.7 26.6 1.0
C11 B:J471258 2.7 31.4 1.0
O7N B:NAP1257 3.5 33.8 1.0
CZ B:TYR147 3.6 32.3 1.0
CE1 B:TYR147 3.7 30.4 1.0
CE1 B:PHE204 3.7 30.6 1.0
CE2 B:TYR147 3.9 26.9 1.0
CD1 B:TYR147 3.9 27.8 1.0
C9 B:J471258 4.0 30.4 1.0
C10 B:J471258 4.0 30.4 1.0
C4N B:NAP1257 4.1 34.5 1.0
CD2 B:TYR147 4.1 24.7 1.0
OH B:TYR147 4.1 36.9 1.0
CD1 B:PHE204 4.1 36.3 1.0
CG B:TYR147 4.2 25.7 1.0
CB B:PRO192 4.2 31.1 1.0
CA B:PRO192 4.3 33.0 1.0
C7N B:NAP1257 4.3 29.1 1.0
C3N B:NAP1257 4.4 33.7 1.0
C8 B:J471258 4.5 32.1 1.0
CG2 B:VAL201 4.7 31.6 1.0
C5N B:NAP1257 4.8 32.7 1.0
CZ B:PHE204 4.9 29.4 1.0
CE1 B:TYR157 4.9 23.1 1.0
N B:PRO192 4.9 32.1 1.0
CD1 B:ILE207 4.9 45.6 1.0
CG1 B:VAL201 5.0 32.8 1.0

Chlorine binding site 3 out of 8 in 4d45

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Chlorine binding site 3 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1258

b:32.1
occ:1.00
CL1 C:J471258 0.0 32.1 1.0
C12 C:J471258 1.7 32.9 1.0
C11 C:J471258 2.7 28.1 1.0
C13 C:J471258 2.7 24.3 1.0
CZ C:TYR147 3.6 25.1 1.0
CE1 C:TYR147 3.6 27.8 1.0
O7N C:NAP1257 3.6 28.2 1.0
CE1 C:PHE204 3.8 23.6 1.0
C10 C:J471258 4.0 26.3 1.0
C9 C:J471258 4.0 27.4 1.0
CD1 C:TYR147 4.0 30.2 1.0
OH C:TYR147 4.0 24.6 1.0
CE2 C:TYR147 4.0 23.8 1.0
C4N C:NAP1257 4.1 32.3 1.0
CB C:PRO192 4.2 23.0 1.0
CD1 C:PHE204 4.2 27.4 1.0
CA C:PRO192 4.3 24.8 1.0
C7N C:NAP1257 4.3 26.7 1.0
CG C:TYR147 4.3 23.3 1.0
CD2 C:TYR147 4.4 20.8 1.0
C3N C:NAP1257 4.4 30.3 1.0
C8 C:J471258 4.5 29.9 1.0
CG2 C:VAL201 4.8 28.7 1.0
CG1 C:VAL201 4.8 31.1 1.0
CE1 C:TYR157 4.8 21.6 1.0
C5N C:NAP1257 4.8 29.8 1.0
CD1 C:ILE207 4.9 39.9 1.0
CZ C:PHE204 4.9 28.6 1.0
N C:PRO192 5.0 26.5 1.0

Chlorine binding site 4 out of 8 in 4d45

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Chlorine binding site 4 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1258

b:39.6
occ:1.00
CL1 D:J471258 0.0 39.6 1.0
C12 D:J471258 1.7 38.6 1.0
C11 D:J471258 2.7 37.2 1.0
C13 D:J471258 2.7 37.4 1.0
CZ D:TYR147 3.2 35.1 1.0
CE1 D:TYR147 3.3 29.9 1.0
O7N D:NAP1257 3.5 40.5 1.0
CE2 D:TYR147 3.6 31.2 1.0
OH D:TYR147 3.6 34.1 1.0
CD1 D:TYR147 3.8 25.8 1.0
C10 D:J471258 4.0 39.6 1.0
C9 D:J471258 4.0 38.7 1.0
CE1 D:PHE204 4.0 33.0 1.0
C4N D:NAP1257 4.0 38.9 1.0
CD2 D:TYR147 4.1 36.2 1.0
CG D:TYR147 4.1 33.2 1.0
C7N D:NAP1257 4.3 38.8 1.0
C3N D:NAP1257 4.3 40.6 1.0
CA D:PRO192 4.4 34.1 1.0
CB D:PRO192 4.4 35.5 1.0
C8 D:J471258 4.5 41.1 1.0
CD1 D:PHE204 4.6 38.6 1.0
C5N D:NAP1257 4.9 33.4 1.0
CE1 D:TYR157 4.9 25.2 1.0

Chlorine binding site 5 out of 8 in 4d45

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Chlorine binding site 5 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl1258

b:31.7
occ:1.00
CL1 E:J471258 0.0 31.7 1.0
C12 E:J471258 1.7 30.3 1.0
C11 E:J471258 2.7 29.2 1.0
C13 E:J471258 2.7 24.8 1.0
O7N E:NAP1257 3.3 29.7 1.0
CZ E:TYR147 3.5 31.1 1.0
CE1 E:TYR147 3.6 26.7 1.0
CE1 E:PHE204 3.8 21.4 1.0
CE2 E:TYR147 3.9 25.5 1.0
CD1 E:TYR147 3.9 21.7 1.0
OH E:TYR147 3.9 29.0 1.0
C10 E:J471258 4.0 29.5 1.0
C9 E:J471258 4.0 25.8 1.0
C4N E:NAP1257 4.0 28.9 1.0
C7N E:NAP1257 4.1 25.6 1.0
CD2 E:TYR147 4.2 23.1 1.0
CG E:TYR147 4.2 24.7 1.0
C3N E:NAP1257 4.3 30.4 1.0
CA E:PRO192 4.3 27.5 1.0
CB E:PRO192 4.4 28.4 1.0
CD1 E:PHE204 4.4 23.8 1.0
C8 E:J471258 4.5 28.9 1.0
CG2 E:VAL201 4.7 29.8 1.0
CG1 E:VAL201 4.8 30.8 1.0
C5N E:NAP1257 4.8 27.5 1.0
CE1 E:TYR157 4.9 23.0 1.0
CZ E:PHE204 4.9 21.6 1.0

Chlorine binding site 6 out of 8 in 4d45

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Chlorine binding site 6 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1258

b:33.0
occ:1.00
CL1 F:J471258 0.0 33.0 1.0
C12 F:J471258 1.7 31.3 1.0
C11 F:J471258 2.7 32.5 1.0
C13 F:J471258 2.7 27.3 1.0
O7N F:NAP1257 3.6 28.2 1.0
CE1 F:TYR147 3.7 32.3 1.0
CZ F:TYR147 3.7 35.7 1.0
CE1 F:PHE204 3.7 33.0 1.0
CD1 F:TYR147 3.9 34.1 1.0
CE2 F:TYR147 3.9 24.0 1.0
C10 F:J471258 4.0 30.4 1.0
C9 F:J471258 4.0 28.2 1.0
C4N F:NAP1257 4.0 30.0 1.0
OH F:TYR147 4.1 36.6 1.0
CB F:PRO192 4.2 32.2 1.0
CD2 F:TYR147 4.2 28.7 1.0
CD1 F:PHE204 4.2 34.2 1.0
CG F:TYR147 4.2 24.5 1.0
CA F:PRO192 4.3 32.9 1.0
C7N F:NAP1257 4.4 29.4 1.0
C3N F:NAP1257 4.4 30.8 1.0
C8 F:J471258 4.5 31.0 1.0
CG2 F:VAL201 4.7 29.7 1.0
C5N F:NAP1257 4.8 30.4 1.0
CZ F:PHE204 4.9 27.7 1.0
CG1 F:VAL201 4.9 28.2 1.0
CE1 F:TYR157 4.9 28.0 1.0

Chlorine binding site 7 out of 8 in 4d45

Go back to Chlorine Binding Sites List in 4d45
Chlorine binding site 7 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1258

b:30.4
occ:1.00
CL1 G:J471258 0.0 30.4 1.0
C12 G:J471258 1.7 28.4 1.0
C11 G:J471258 2.7 30.6 1.0
C13 G:J471258 2.7 25.2 1.0
O7N G:NAP1257 3.5 24.0 1.0
CZ G:TYR147 3.6 28.9 1.0
CE1 G:TYR147 3.6 27.7 1.0
CE2 G:TYR147 3.9 25.4 1.0
C10 G:J471258 3.9 27.8 1.0
CD1 G:TYR147 3.9 29.0 1.0
C9 G:J471258 4.0 27.9 1.0
CE1 G:PHE204 4.0 26.4 1.0
OH G:TYR147 4.0 33.4 1.0
CB G:PRO192 4.0 22.9 1.0
C4N G:NAP1257 4.1 30.7 1.0
CA G:PRO192 4.2 26.9 1.0
C7N G:NAP1257 4.3 26.4 1.0
CD2 G:TYR147 4.3 26.4 1.0
CG G:TYR147 4.3 20.2 1.0
C3N G:NAP1257 4.4 28.6 1.0
CD1 G:PHE204 4.4 29.6 1.0
C8 G:J471258 4.5 30.3 1.0
CG2 G:VAL201 4.6 31.8 1.0
CG1 G:VAL201 4.8 34.1 1.0
CE1 G:TYR157 4.8 21.8 1.0
C5N G:NAP1257 4.9 29.4 1.0
N G:PRO192 4.9 28.8 1.0
O2 G:J471258 5.0 26.6 1.0

Chlorine binding site 8 out of 8 in 4d45

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Chlorine binding site 8 out of 8 in the Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of S. Aureus Fabi in Complex with Nadp and 5-Bromo-2-(4-Chloro-2-Hydroxyphenoxy)Benzonitrile within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1258

b:39.4
occ:1.00
CL1 H:J471258 0.0 39.4 1.0
C12 H:J471258 1.7 40.5 1.0
C13 H:J471258 2.7 39.7 1.0
C11 H:J471258 2.7 38.1 1.0
CZ H:TYR147 3.4 39.5 1.0
CE1 H:TYR147 3.5 31.4 1.0
O7N H:NAP1257 3.6 37.2 1.0
CE2 H:TYR147 3.7 34.6 1.0
OH H:TYR147 3.8 41.5 1.0
CE1 H:PHE204 3.9 36.8 1.0
CD1 H:TYR147 3.9 31.3 1.0
C9 H:J471258 4.0 39.6 1.0
C10 H:J471258 4.0 40.7 1.0
C4N H:NAP1257 4.1 39.9 1.0
CD2 H:TYR147 4.2 35.3 1.0
CG H:TYR147 4.2 30.1 1.0
C7N H:NAP1257 4.3 36.1 1.0
CD1 H:PHE204 4.4 38.8 1.0
C3N H:NAP1257 4.4 37.8 1.0
CA H:PRO192 4.4 32.4 1.0
C8 H:J471258 4.5 40.2 1.0
CB H:PRO192 4.6 32.7 1.0
CG2 H:VAL201 4.8 48.1 1.0
C5N H:NAP1257 4.9 36.2 1.0
CD1 H:ILE207 4.9 50.2 1.0
CG1 H:VAL201 4.9 49.8 1.0
CE1 H:TYR157 5.0 32.4 1.0

Reference:

J.Schiebel, A.Chang, B.Merget, G.R.Bommineni, W.Yu, L.A.Spagnuolo, M.V.Baxter, M.Tareilus, P.J.Tonge, C.Kisker, C.A.Sotriffer. An Ordered Water Channel in Staphylococcus Aureus Fabi: Unraveling the Mechanism of Substrate Recognition and Reduction. Biochemistry 2015.
ISSN: ESSN 1520-4995
PubMed: 25706582
DOI: 10.1021/BI5014358
Page generated: Sun Jul 21 11:45:55 2024

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