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Chlorine in PDB 4d8w: Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site

Enzymatic activity of Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site

All present enzymatic activity of Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site:
4.4.1.15;

Protein crystallography data

The structure of Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site, PDB code: 4d8w was solved by S.R.Bharath, B.Shveta, K.H.Rajesh, H.S.Savithri, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.38 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.290, 165.190, 68.060, 90.00, 118.71, 90.00
R / Rfree (%) 18.3 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site (pdb code 4d8w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site, PDB code: 4d8w:

Chlorine binding site 1 out of 1 in 4d8w

Go back to Chlorine Binding Sites List in 4d8w
Chlorine binding site 1 out of 1 in the Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked with D-Cys Shows Pyruvate Bound 4 A Away From Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:35.3
occ:1.00
 N2 A:BEN402 2.8 15.0 1.0
O A:TYR30 3.0 14.0 1.0
CD1 A:TYR30 3.6 14.7 1.0
C A:TYR30 3.8 14.7 1.0
CA A:TYR30 3.8 14.5 1.0
C A:BEN402 4.1 14.9 1.0
CE1 A:TYR30 4.1 14.9 1.0
CG A:TYR30 4.3 14.8 1.0
O A:ASP29 4.3 14.9 1.0
CB A:TYR30 4.5 14.5 1.0
N1 A:BEN402 4.6 14.7 1.0
N A:TYR30 4.9 14.5 1.0

Reference:

S.R.Bharath, S.Bisht, R.K.Harijan, H.S.Savithri, M.R.N.Murthy. Structural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella Typhimurium D-Cysteine Desulfhydrase. Plos One V. 7 36267 2012.
ISSN: ESSN 1932-6203
PubMed: 22574144
DOI: 10.1371/JOURNAL.PONE.0036267
Page generated: Sat Dec 12 10:31:29 2020

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