Atomistry » Chlorine » PDB 4dhn-4dph » 4dki
Atomistry »
  Chlorine »
    PDB 4dhn-4dph »
      4dki »

Chlorine in PDB 4dki: Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole

Enzymatic activity of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole

All present enzymatic activity of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole:
3.4.16.4;

Protein crystallography data

The structure of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole, PDB code: 4dki was solved by A.L.Lovering, M.C.Gretes, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.29 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.847, 103.471, 186.500, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 23.6

Other elements in 4dki:

The structure of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole also contains other interesting chemical elements:

Cadmium (Cd) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole (pdb code 4dki). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole, PDB code: 4dki:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4dki

Go back to Chlorine Binding Sites List in 4dki
Chlorine binding site 1 out of 4 in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl708

b:41.3
occ:1.00
 CD A:CD705 2.5 43.5 1.0
OE1 A:GLU145 3.2 25.6 1.0
OG1 A:THR300 3.2 50.4 1.0
CG A:GLU145 3.3 42.0 1.0
CD A:GLU145 3.6 52.5 1.0
OE2 B:GLU145 3.6 41.1 1.0
CG2 A:VAL302 3.9 42.9 1.0
ND1 A:HIS143 4.0 45.4 1.0
CB A:HIS143 4.1 40.9 1.0
CB A:THR300 4.4 48.1 1.0
CG A:HIS143 4.5 43.7 1.0
CG1 A:ILE309 4.5 53.3 1.0
CB A:GLU145 4.6 36.6 1.0
CD B:GLU145 4.6 51.5 1.0
CG2 A:THR300 4.6 41.6 1.0
OE2 A:GLU145 4.7 26.2 1.0
OE1 B:GLU145 4.8 31.6 1.0
CD A:ARG298 4.9 70.9 1.0

Chlorine binding site 2 out of 4 in 4dki

Go back to Chlorine Binding Sites List in 4dki
Chlorine binding site 2 out of 4 in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl709

b:47.6
occ:1.00
 CD A:CD707 2.4 60.3 1.0
NE2 A:GLN140 3.5 58.5 1.0
NE2 A:GLN137 3.5 52.4 1.0
CG B:GLN207 3.6 67.7 1.0
OD1 B:ASP209 3.7 71.7 1.0
CD A:GLN137 3.7 64.9 1.0
NE2 A:HIS311 3.7 53.6 1.0
CB A:ALA310 3.7 52.0 1.0
O A:GLY135 3.8 49.5 1.0
CG A:GLN137 4.1 50.8 1.0
OE1 A:GLN137 4.1 60.3 1.0
CB B:GLN207 4.2 66.2 1.0
CD2 A:HIS311 4.2 52.6 1.0
OG1 B:THR210 4.5 70.2 1.0
CD A:GLN140 4.5 61.4 1.0
CG B:ASP209 4.5 71.1 1.0
OD2 B:ASP209 4.6 77.5 1.0
CD B:GLN207 4.6 78.0 1.0
CE1 A:HIS311 4.6 53.8 1.0
OE1 A:GLN140 4.6 50.6 1.0
CB A:GLN137 4.8 46.1 1.0
CA A:ALA310 4.8 51.4 1.0
OE1 B:GLN207 5.0 67.6 1.0
C A:GLY135 5.0 49.4 1.0

Chlorine binding site 3 out of 4 in 4dki

Go back to Chlorine Binding Sites List in 4dki
Chlorine binding site 3 out of 4 in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl707

b:52.0
occ:1.00
 CD B:CD703 2.4 41.0 1.0
OG1 B:THR300 3.2 27.0 1.0
OE1 B:GLU145 3.3 31.6 1.0
CG B:GLU145 3.5 43.6 1.0
OE2 A:GLU145 3.6 26.2 1.0
NH1 B:ARG298 3.6 62.5 1.0
CD B:GLU145 3.7 51.5 1.0
ND1 B:HIS143 3.8 40.6 1.0
CB B:HIS143 3.9 34.9 1.0
CG2 B:VAL302 4.0 35.9 1.0
CD1 B:ILE309 4.0 48.2 1.0
CG1 B:ILE309 4.1 43.7 1.0
CG B:HIS143 4.3 38.6 1.0
CB B:THR300 4.3 31.6 1.0
CD A:GLU145 4.7 52.5 1.0
CG2 B:THR300 4.7 23.0 1.0
CZ B:ARG298 4.8 92.9 1.0
CB B:GLU145 4.9 35.9 1.0
CE1 B:HIS143 4.9 40.0 1.0
OE2 B:GLU145 4.9 41.1 1.0
OE1 A:GLU145 5.0 25.6 1.0

Chlorine binding site 4 out of 4 in 4dki

Go back to Chlorine Binding Sites List in 4dki
Chlorine binding site 4 out of 4 in the Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structural Insights Into the Anti- Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl708

b:44.7
occ:1.00
 CD B:CD704 2.3 46.6 1.0
O B:GLY135 3.3 35.3 1.0
NE2 B:GLN137 3.3 59.5 1.0
NE2 B:HIS311 3.4 44.0 1.0
NE2 B:GLN140 3.5 42.0 1.0
CD B:GLN137 3.5 59.5 1.0
CG B:GLN137 3.5 41.2 1.0
CG A:GLN207 3.7 62.3 1.0
OD2 A:ASP209 3.8 68.8 1.0
CB B:ALA310 3.8 37.3 1.0
CD2 B:HIS311 4.0 43.2 1.0
CB A:GLN207 4.2 52.7 1.0
OE1 B:GLN137 4.3 46.6 1.0
CE1 B:HIS311 4.4 44.4 1.0
CD B:GLN140 4.4 48.1 1.0
OE1 B:GLN140 4.4 35.9 1.0
OD1 A:ASP209 4.4 66.8 1.0
C B:GLY135 4.5 37.0 1.0
CG A:ASP209 4.6 64.2 1.0
OG1 A:THR210 4.8 60.3 1.0
CA B:ALA310 4.9 36.7 1.0
CB B:GLN137 4.9 34.1 1.0
CD A:GLN207 4.9 77.7 1.0

Reference:

A.L.Lovering, M.C.Gretes, S.S.Safadi, F.Danel, L.De Castro, M.G.Page, N.C.Strynadka. Structural Insights Into the Anti-Methicillin-Resistant Staphylococcus Aureus (Mrsa) Activity of Ceftobiprole. J.Biol.Chem. V. 287 32096 2012.
ISSN: ISSN 0021-9258
PubMed: 22815485
DOI: 10.1074/JBC.M112.355644
Page generated: Sun Jul 21 12:08:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy