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Chlorine in PDB 4dt3: Crystal Structure of Zinc-Charged Lysozyme

Enzymatic activity of Crystal Structure of Zinc-Charged Lysozyme

All present enzymatic activity of Crystal Structure of Zinc-Charged Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Zinc-Charged Lysozyme, PDB code: 4dt3 was solved by Y.J.An, C.S.Jeong, S.S.Cha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.38 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.102, 79.102, 36.816, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.8

Other elements in 4dt3:

The structure of Crystal Structure of Zinc-Charged Lysozyme also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Zinc-Charged Lysozyme (pdb code 4dt3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Zinc-Charged Lysozyme, PDB code: 4dt3:

Chlorine binding site 1 out of 1 in 4dt3

Go back to Chlorine Binding Sites List in 4dt3
Chlorine binding site 1 out of 1 in the Crystal Structure of Zinc-Charged Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Zinc-Charged Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:12.4
occ:1.00
ND2 A:ASN113 3.4 10.2 1.0
CB A:ASN113 3.7 10.1 1.0
CA A:ALA110 3.9 11.5 1.0
CG A:ASN113 4.0 11.7 1.0
O A:VAL109 4.3 13.6 1.0
CD A:ARG114 4.3 14.1 1.0
CG1 A:VAL109 4.3 16.5 1.0
N A:ALA110 4.3 10.7 1.0
CB A:ALA110 4.4 11.8 1.0
C A:VAL109 4.5 11.4 1.0
CG A:ARG114 4.5 14.0 1.0
O A:HOH345 4.6 24.4 1.0
C A:ALA110 4.9 11.2 1.0
O A:ALA110 4.9 9.0 1.0
CA A:ASN113 5.0 11.1 1.0

Reference:

S.S.Cha, Y.J.An, C.S.Jeong, M.K.Kim, S.G.Lee, K.H.Lee, B.H.Oh. Experimental Phasing Using Zinc Anomalous Scattering Acta Crystallogr.,Sect.D V. 68 1253 2012.
ISSN: ISSN 0907-4449
PubMed: 22948927
DOI: 10.1107/S0907444912024420
Page generated: Sat Dec 12 10:32:49 2020

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