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Chlorine in PDB 4dut: The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis

Enzymatic activity of The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis

All present enzymatic activity of The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis:
2.7.4.6;

Protein crystallography data

The structure of The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis, PDB code: 4dut was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.01 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.720, 80.720, 112.960, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 26.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis (pdb code 4dut). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis, PDB code: 4dut:

Chlorine binding site 1 out of 1 in 4dut

Go back to Chlorine Binding Sites List in 4dut
Chlorine binding site 1 out of 1 in the The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:51.1
occ:1.00
NE A:ARG44 3.6 39.5 1.0
NH2 A:ARG44 3.8 39.8 1.0
CZ A:ARG44 4.2 39.8 1.0
CD1 A:ILE68 4.3 40.0 1.0
CB A:ARG44 4.5 36.5 1.0
CD A:ARG44 4.6 39.5 1.0

Reference:

L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis. Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome. Plos One V. 8 53851 2013.
ISSN: ESSN 1932-6203
PubMed: 23382856
DOI: 10.1371/JOURNAL.PONE.0053851
Page generated: Sat Dec 12 10:32:56 2020

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