Chlorine in PDB 4e4d: Crystal Structure of Mouse Rankl-Opg Complex

The structure of Crystal Structure of Mouse Rankl-Opg Complex, PDB code: 4e4d was solved by C.A.Nelson, D.H.Fremont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.70 / 2.70
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	109.763, 109.763, 78.800, 90.00, 90.00, 120.00
R / Rfree (%)	19.4 / 23

The binding sites of Chlorine atom in the Crystal Structure of Mouse Rankl-Opg Complex (pdb code 4e4d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mouse Rankl-Opg Complex, PDB code: 4e4d:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Mouse Rankl-Opg Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mouse Rankl-Opg Complex within 5.0Å range: probe atom residue distance (Å) B Occ X:Cl401 b:64.2 occ:1.00 O X:HOH526 3.1 65.0 1.0 N X:GLY203 3.1 53.2 1.0 N X:TRP186 3.2 55.5 1.0 N X:ASN202 3.5 70.1 1.0 CA X:ASN202 3.6 61.3 1.0 CD2 X:LEU200 3.6 57.5 1.0 CA X:SER185 3.6 47.9 1.0 O X:SER184 3.7 65.6 1.0 CG X:LEU200 3.7 59.5 1.0 C X:ASN202 3.8 62.0 1.0 O X:TRP186 3.9 49.8 1.0 C X:SER185 3.9 49.9 1.0 CA X:GLY203 4.0 53.1 1.0 CD1 X:LEU200 4.1 51.7 1.0 N X:SER185 4.1 49.5 1.0 C X:SER184 4.1 53.1 1.0 CD1 X:TRP186 4.2 52.9 1.0 CA X:TRP186 4.2 44.7 1.0 O X:HOH532 4.3 64.4 1.0 CB X:TRP186 4.4 51.4 1.0 C X:TRP186 4.5 43.9 1.0 C X:SER201 4.5 73.5 1.0 CG X:TRP186 4.7 52.6 1.0 CB X:SER185 4.8 55.4 1.0 O X:ASN202 5.0 67.4 1.0 N X:SER201 5.0 57.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Mouse Rankl-Opg Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mouse Rankl-Opg Complex within 5.0Å range: probe atom residue distance (Å) B Occ X:Cl402 b:54.4 occ:1.00 NE X:ARG190 3.0 52.0 1.0 NH2 X:ARG190 3.3 57.6 1.0 N X:HIS188 3.3 54.6 1.0 N X:ASP189 3.4 49.1 1.0 CZ X:ARG190 3.6 55.0 1.0 CA X:TYR187 3.7 44.1 1.0 CB X:TYR187 3.8 43.5 1.0 CD1 X:TYR187 3.8 50.9 1.0 O X:HOH525 3.9 60.7 1.0 ND1 X:HIS188 3.9 62.7 1.0 C X:TYR187 4.0 48.0 1.0 C X:ASP189 4.0 53.6 1.0 CA X:ASP189 4.1 50.7 1.0 CD X:ARG190 4.1 49.3 1.0 CE1 X:HIS188 4.2 55.7 1.0 CG X:TYR187 4.2 49.5 1.0 CG X:ARG190 4.2 47.8 1.0 CB X:ASP189 4.2 53.6 1.0 C X:HIS188 4.3 48.5 1.0 CA X:HIS188 4.3 44.7 1.0 O X:ASP189 4.3 59.4 1.0 N X:ARG190 4.4 47.2 1.0 CG X:HIS188 4.5 55.6 1.0 CB X:ARG190 4.5 49.2 1.0 NE2 X:HIS188 4.8 56.5 1.0 CE1 X:TYR187 4.8 50.1 1.0 NH1 X:ARG190 4.9 58.7 1.0 CB X:HIS188 5.0 48.2 1.0

C.A.Nelson, J.T.Warren, M.W.Wang, S.L.Teitelbaum, D.H.Fremont. Rankl Employs Distinct Binding Modes to Engage Rank and the Osteoprotegerin Decoy Receptor. Structure V. 20 1971 2012.
ISSN: ISSN 0969-2126
PubMed: 23039992
DOI: 10.1016/J.STR.2012.08.030