Chlorine in PDB 4ebq: Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5

The structure of Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5, PDB code: 4ebq was solved by M.H.Matho, D.M.Zajonc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.12 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.190, 93.360, 135.960, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 22.9

The binding sites of Chlorine atom in the Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5 (pdb code 4ebq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5, PDB code: 4ebq:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:14.5 occ:0.70 OG1 H:THR123 3.0 18.5 1.0 O H:HOH412 3.1 35.4 1.0 N H:THR123 3.3 18.6 1.0 CB H:THR123 3.6 17.4 1.0 O H:HOH416 4.0 21.5 1.0 CA H:THR123 4.0 16.8 1.0 C H:LYS122 4.3 19.4 1.0 CA H:LYS122 4.4 22.2 1.0 O H:HOH518 4.4 57.2 1.0 O H:ALA121 4.7 22.0 1.0 CD2 H:LEU12 4.7 29.6 1.0 O H:HOH557 4.7 37.9 1.0 O H:HOH492 4.8 33.6 1.0 CE H:LYS14 4.8 43.5 0.7 CG2 H:THR123 5.0 15.8 1.0 O H:HOH572 5.0 33.0 1.0

Chlorine binding site 2 out of 2 in the Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Fab Structure of Anti-Vaccinia Virus D8L Antigen Mouse IGG2A LA5 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl306 b:21.5 occ:1.00 O H:HOH507 2.9 37.0 1.0 O H:HOH553 2.9 24.4 1.0 O H:HOH586 3.0 23.8 1.0 NZ H:LYS150 3.1 23.6 1.0 OG1 H:THR183 3.6 16.7 1.0 CA H:GLY151 3.6 14.7 1.0 CG H:LYS150 3.8 16.4 1.0 N H:GLY151 3.8 13.8 1.0 CB H:LEU181 4.0 16.2 1.0 CE H:LYS150 4.0 21.6 1.0 CD1 H:LEU181 4.2 21.4 1.0 O H:HOH587 4.3 34.0 1.0 CD H:LYS150 4.6 18.6 1.0 C H:LYS150 4.6 14.0 1.0 O H:TYR182 4.7 13.2 1.0 CG H:LEU181 4.8 17.5 1.0 O H:HOH470 4.8 20.4 1.0 O H:LEU181 4.9 15.8 1.0 CB H:THR183 5.0 14.0 1.0 C H:LEU181 5.0 15.5 1.0 C H:GLY151 5.0 14.4 1.0

M.H.Matho, M.Maybeno, M.R.Benhnia, D.Becker, X.Meng, Y.Xiang, S.Crotty, B.Peters, D.M.Zajonc. Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition By the Antibody LA5. J.Virol. V. 86 8050 2012.
ISSN: ISSN 0022-538X
PubMed: 22623786
DOI: 10.1128/JVI.00836-12