Chlorine in PDB 4edp: 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
Protein crystallography data
The structure of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp
was solved by
A.S.Halavaty,
Z.Wawrzak,
O.Onopriyenko,
S.N.Peterson,
W.F.Anderson,
A.Savchenko,
Center For Structural Genomics Of Infectious Diseases(Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.10 /
1.85
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.318,
50.743,
143.774,
90.00,
98.83,
90.00
|
R / Rfree (%)
|
16.3 /
19.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
(pdb code 4edp). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4edp
Go back to
Chlorine Binding Sites List in 4edp
Chlorine binding site 1 out
of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:21.8
occ:1.00
|
O
|
A:HOH513
|
3.2
|
16.1
|
1.0
|
O
|
A:HOH521
|
3.2
|
21.1
|
1.0
|
O
|
A:HOH501
|
3.3
|
13.8
|
1.0
|
N
|
A:SER92
|
3.3
|
15.1
|
1.0
|
N
|
A:GLU91
|
3.6
|
15.1
|
1.0
|
O
|
A:HOH611
|
3.8
|
22.0
|
0.7
|
CB
|
A:SER92
|
3.9
|
18.3
|
1.0
|
O
|
A:PHE261
|
3.9
|
12.3
|
1.0
|
OG
|
A:SER92
|
3.9
|
21.1
|
1.0
|
CB
|
A:ALA90
|
4.0
|
16.9
|
1.0
|
CB
|
A:GLU91
|
4.0
|
14.0
|
1.0
|
CZ
|
A:PHE329
|
4.1
|
19.7
|
1.0
|
CA
|
A:GLU91
|
4.1
|
14.2
|
1.0
|
CE2
|
A:PHE329
|
4.1
|
19.6
|
1.0
|
C
|
A:GLU91
|
4.2
|
14.9
|
1.0
|
CA
|
A:SER92
|
4.2
|
16.9
|
1.0
|
C
|
A:ALA90
|
4.2
|
15.5
|
1.0
|
CB
|
A:ASN260
|
4.2
|
13.6
|
1.0
|
CA
|
A:ALA90
|
4.5
|
15.5
|
1.0
|
CG2
|
A:THR173
|
4.5
|
14.9
|
1.0
|
N
|
A:PHE261
|
4.7
|
13.5
|
1.0
|
CE1
|
A:PHE329
|
4.7
|
19.7
|
1.0
|
CD2
|
A:PHE329
|
4.8
|
17.7
|
1.0
|
O
|
A:HOH698
|
4.8
|
32.5
|
1.0
|
O
|
A:HOH611
|
4.9
|
17.9
|
0.3
|
OD1
|
A:ASN260
|
4.9
|
13.4
|
1.0
|
CG
|
A:ASN260
|
4.9
|
15.2
|
1.0
|
O
|
A:ALA90
|
5.0
|
15.4
|
1.0
|
C
|
A:PHE261
|
5.0
|
12.4
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4edp
Go back to
Chlorine Binding Sites List in 4edp
Chlorine binding site 2 out
of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:33.9
occ:0.80
|
OG
|
A:SER82
|
3.1
|
30.9
|
1.0
|
O
|
A:HOH663
|
3.2
|
34.0
|
1.0
|
O
|
A:HOH595
|
3.3
|
36.5
|
1.0
|
ND2
|
A:ASN79
|
3.6
|
36.4
|
1.0
|
CE
|
A:LYS75
|
3.6
|
33.3
|
0.5
|
CB
|
A:SER82
|
3.6
|
29.1
|
1.0
|
CA
|
A:MET76
|
3.7
|
28.1
|
1.0
|
N
|
A:MET76
|
3.9
|
28.0
|
1.0
|
CG
|
A:LYS75
|
3.9
|
32.8
|
0.5
|
CB
|
A:MET76
|
3.9
|
27.4
|
1.0
|
CD1
|
A:ILE84
|
3.9
|
34.9
|
1.0
|
C
|
A:LYS75
|
4.1
|
29.6
|
0.5
|
CB
|
A:ASN79
|
4.1
|
35.3
|
1.0
|
C
|
A:LYS75
|
4.1
|
29.4
|
0.5
|
O
|
A:LYS75
|
4.1
|
30.8
|
0.5
|
CA
|
A:SER82
|
4.1
|
30.2
|
1.0
|
O
|
A:LYS75
|
4.1
|
30.6
|
0.5
|
CD
|
A:LYS75
|
4.2
|
33.7
|
0.5
|
CG
|
A:ASN79
|
4.3
|
35.6
|
1.0
|
CG1
|
A:ILE84
|
4.4
|
28.6
|
1.0
|
CB
|
A:LYS75
|
4.4
|
30.7
|
0.5
|
CB
|
A:LYS75
|
4.5
|
31.4
|
0.5
|
NZ
|
A:LYS75
|
4.5
|
34.4
|
0.5
|
CA
|
A:LYS75
|
4.9
|
30.2
|
0.5
|
CA
|
A:LYS75
|
4.9
|
30.6
|
0.5
|
N
|
A:GLN83
|
5.0
|
29.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4edp
Go back to
Chlorine Binding Sites List in 4edp
Chlorine binding site 3 out
of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:52.5
occ:1.00
|
NZ
|
B:LYS158
|
3.1
|
28.6
|
1.0
|
N
|
B:GLU149
|
3.4
|
19.2
|
1.0
|
CE
|
B:LYS158
|
3.8
|
27.6
|
1.0
|
CA
|
B:ILE148
|
3.9
|
21.3
|
1.0
|
CG2
|
B:ILE148
|
4.0
|
20.0
|
1.0
|
C
|
B:ILE148
|
4.1
|
19.9
|
1.0
|
CB
|
B:GLU149
|
4.2
|
20.9
|
1.0
|
O
|
B:GLY147
|
4.2
|
27.3
|
1.0
|
CA
|
B:GLU149
|
4.4
|
18.6
|
1.0
|
CB
|
B:ILE148
|
4.5
|
20.3
|
1.0
|
O
|
B:GLU149
|
4.5
|
16.5
|
1.0
|
CG
|
B:GLU160
|
4.8
|
20.8
|
1.0
|
CD
|
B:GLU160
|
4.8
|
27.0
|
1.0
|
O
|
B:HOH825
|
5.0
|
55.3
|
1.0
|
C
|
B:GLU149
|
5.0
|
17.2
|
1.0
|
N
|
B:ILE148
|
5.0
|
22.9
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4edp
Go back to
Chlorine Binding Sites List in 4edp
Chlorine binding site 4 out
of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl402
b:22.6
occ:1.00
|
O
|
B:HOH534
|
3.1
|
17.4
|
1.0
|
O
|
B:HOH501
|
3.2
|
14.9
|
1.0
|
O
|
B:HOH516
|
3.3
|
23.1
|
1.0
|
N
|
B:SER92
|
3.3
|
15.7
|
1.0
|
N
|
B:GLU91
|
3.6
|
14.3
|
1.0
|
O
|
B:HOH644
|
3.7
|
29.7
|
1.0
|
O
|
B:PHE261
|
3.8
|
13.4
|
1.0
|
CB
|
B:SER92
|
3.9
|
18.3
|
1.0
|
OG
|
B:SER92
|
3.9
|
20.3
|
1.0
|
CB
|
B:GLU91
|
4.0
|
14.4
|
1.0
|
CB
|
B:ALA90
|
4.0
|
15.0
|
1.0
|
CA
|
B:GLU91
|
4.1
|
14.6
|
1.0
|
CE2
|
B:PHE329
|
4.1
|
20.1
|
1.0
|
CZ
|
B:PHE329
|
4.1
|
21.1
|
1.0
|
C
|
B:GLU91
|
4.2
|
15.6
|
1.0
|
CA
|
B:SER92
|
4.2
|
16.8
|
1.0
|
C
|
B:ALA90
|
4.2
|
14.1
|
1.0
|
CB
|
B:ASN260
|
4.2
|
12.5
|
1.0
|
CG2
|
B:THR173
|
4.5
|
15.4
|
1.0
|
CA
|
B:ALA90
|
4.5
|
13.4
|
1.0
|
O
|
B:HOH795
|
4.6
|
51.7
|
1.0
|
N
|
B:PHE261
|
4.6
|
10.7
|
1.0
|
CD2
|
B:PHE329
|
4.8
|
18.5
|
1.0
|
CE1
|
B:PHE329
|
4.8
|
18.6
|
1.0
|
OD1
|
B:ASN260
|
4.9
|
13.3
|
1.0
|
C
|
B:PHE261
|
4.9
|
12.6
|
1.0
|
CG
|
B:ASN260
|
4.9
|
13.2
|
1.0
|
O
|
B:HOH616
|
4.9
|
28.1
|
1.0
|
|
Reference:
A.S.Halavaty,
Z.Wawrzak,
O.Onopriyenko,
S.N.Peterson,
W.F.Anderson,
A.Savchenko,
Center For Structural Genomics Of Infectious Diseases(Csgid).
1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 To Be Published.
Page generated: Sun Jul 21 12:47:21 2024
|