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Chlorine in PDB 4eh1: Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor

Enzymatic activity of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor

All present enzymatic activity of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor:
1.14.12.17;

Protein crystallography data

The structure of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor, PDB code: 4eh1 was solved by Y.Kim, M.Gu, J.Hasseman, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.41 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.329, 93.329, 112.594, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 21.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor (pdb code 4eh1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor, PDB code: 4eh1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4eh1

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Chlorine binding site 1 out of 5 in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:78.4
occ:1.00
 O A:HOH485 3.2 53.5 1.0
N A:SER99 3.3 37.9 1.0
CA A:ASP98 3.7 36.6 1.0
OD1 A:ASP98 3.8 41.1 1.0
CB A:ASP98 3.8 38.9 1.0
OG A:SER99 3.8 59.2 1.0
C A:ASP98 4.0 36.8 1.0
CG A:ASP98 4.0 44.7 1.0
CA A:SER99 4.4 43.8 1.0
O A:HOH504 4.4 54.6 1.0
O A:SER99 4.4 45.4 1.0
CB A:SER99 4.5 48.9 1.0
OD2 A:ASP98 4.9 46.7 1.0
C A:SER99 4.9 46.1 1.0
O A:GLY97 4.9 32.5 1.0

Chlorine binding site 2 out of 5 in 4eh1

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Chlorine binding site 2 out of 5 in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:85.3
occ:1.00
 O A:HOH491 3.0 57.2 1.0
NE A:ARG114 3.5 47.4 1.0
NH2 A:ARG114 4.1 48.1 1.0
CZ A:ARG114 4.3 47.4 1.0
CD A:ARG114 4.4 45.6 1.0

Chlorine binding site 3 out of 5 in 4eh1

Go back to Chlorine Binding Sites List in 4eh1
Chlorine binding site 3 out of 5 in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:86.4
occ:1.00
 OD1 A:ASN152 3.3 33.0 1.0
O A:HOH488 3.6 60.6 1.0
C A:CYS151 3.7 22.8 1.0
O A:HOH470 3.8 38.7 1.0
O A:CYS151 3.8 27.2 1.0
CA A:CYS151 3.9 18.6 1.0
N A:CYS151 4.1 20.6 1.0
N A:ASN152 4.2 26.7 1.0
C A:ALA150 4.2 23.7 1.0
CB A:ARG179 4.2 27.3 1.0
O A:ALA150 4.2 25.2 1.0
CB A:ALA150 4.4 25.1 1.0
CD A:ARG179 4.4 35.2 1.0
O A:HOH434 4.4 41.4 1.0
CG A:ASN152 4.4 39.4 1.0
CA A:ASN152 4.6 29.2 1.0
CG A:ARG179 4.8 32.9 1.0
O A:HOH407 4.8 30.1 1.0
CB A:ALA123 4.8 20.4 1.0
NH1 A:ARG179 4.9 29.8 1.0
CA A:ALA150 4.9 23.6 1.0

Chlorine binding site 4 out of 5 in 4eh1

Go back to Chlorine Binding Sites List in 4eh1
Chlorine binding site 4 out of 5 in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:93.5
occ:1.00
 NH2 B:ARG179 3.7 57.0 1.0
ND2 B:ASN152 3.9 53.7 1.0
CG B:ASN152 4.8 54.2 1.0
OD1 B:ASN152 5.0 56.9 1.0
CZ B:ARG179 5.0 62.4 1.0

Chlorine binding site 5 out of 5 in 4eh1

Go back to Chlorine Binding Sites List in 4eh1
Chlorine binding site 5 out of 5 in the Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:73.9
occ:1.00
 N B:VAL125 3.4 35.7 1.0
NZ B:LYS74 3.6 64.8 1.0
CA B:GLY124 3.8 34.3 1.0
CD B:LYS74 3.8 46.5 1.0
CG1 B:VAL125 3.9 37.0 1.0
CE B:LYS74 3.9 57.9 1.0
C B:GLY124 4.1 35.4 1.0
CB B:VAL125 4.3 35.5 1.0
CA B:VAL125 4.4 37.8 1.0
CG B:PRO210 4.5 46.1 1.0
O B:HOH557 4.7 37.2 1.0
O B:ALA123 4.7 38.4 1.0
CD B:PRO210 4.7 46.9 1.0
N B:GLY124 4.9 33.8 1.0

Reference:

Y.Kim, M.Gu, J.Hasseman, W.F.Anderson, A.Joachimiak. Crystal Structure of the Flavohem-Like-Fad/Nad Binding Domain of Nitric Oxide Dioxygenase From Vibrio Cholerae O1 Biovar El Tor To Be Published.
Page generated: Sat Dec 12 10:34:31 2020

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