Chlorine in PDB 4emx: Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
Protein crystallography data
The structure of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature, PDB code: 4emx
was solved by
H.Botti,
L.Bonilla,
F.Trajtenberg,
R.Radi,
A.Buschiazzo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.50 /
2.30
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.880,
59.230,
95.610,
75.17,
87.83,
74.20
|
R / Rfree (%)
|
18.7 /
23.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
(pdb code 4emx). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature, PDB code: 4emx:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 1 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl601
b:98.7
occ:1.00
|
NZ
|
A:LYS432
|
3.1
|
88.6
|
1.0
|
NZ
|
A:LYS190
|
3.2
|
0.5
|
1.0
|
CE
|
A:LYS432
|
4.0
|
84.2
|
1.0
|
NH1
|
A:ARG428
|
4.3
|
72.6
|
1.0
|
CE
|
A:LYS190
|
4.6
|
91.3
|
1.0
|
CD
|
A:LYS519
|
4.6
|
0.1
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 2 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl602
b:67.6
occ:1.00
|
NE2
|
A:HIS242
|
2.8
|
42.0
|
1.0
|
O
|
A:HOH811
|
2.9
|
65.8
|
1.0
|
O
|
A:HOH718
|
2.9
|
50.4
|
1.0
|
O
|
A:HOH822
|
2.9
|
57.6
|
1.0
|
CE1
|
A:HIS242
|
3.5
|
38.4
|
1.0
|
CD1
|
A:LEU238
|
3.7
|
47.2
|
1.0
|
CE2
|
A:TYR150
|
4.0
|
45.3
|
1.0
|
OH
|
A:TYR150
|
4.0
|
44.8
|
1.0
|
CD2
|
A:HIS242
|
4.0
|
44.7
|
1.0
|
CE
|
A:LYS199
|
4.1
|
51.4
|
1.0
|
CB
|
A:ALA291
|
4.3
|
47.7
|
1.0
|
CZ
|
A:TYR150
|
4.4
|
45.7
|
1.0
|
O
|
A:HOH823
|
4.7
|
65.6
|
1.0
|
CG
|
A:LEU238
|
4.7
|
54.3
|
1.0
|
O
|
A:HOH717
|
4.7
|
63.8
|
1.0
|
CD2
|
A:LEU238
|
4.7
|
44.6
|
1.0
|
O
|
A:HOH800
|
4.8
|
54.1
|
1.0
|
O
|
A:HOH773
|
4.8
|
51.6
|
1.0
|
NZ
|
A:LYS199
|
4.8
|
47.2
|
1.0
|
O
|
A:HOH782
|
4.8
|
53.0
|
1.0
|
ND1
|
A:HIS242
|
4.8
|
38.9
|
1.0
|
CD
|
A:LYS199
|
4.9
|
49.0
|
1.0
|
CD2
|
A:TYR150
|
5.0
|
44.9
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 3 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl603
b:92.8
occ:1.00
|
OH
|
A:TYR411
|
3.1
|
68.4
|
1.0
|
OG
|
A:SER489
|
3.5
|
69.7
|
1.0
|
CE1
|
A:TYR411
|
3.7
|
64.8
|
1.0
|
CZ
|
A:TYR411
|
3.8
|
64.9
|
1.0
|
NH1
|
A:ARG410
|
4.0
|
63.3
|
1.0
|
CB
|
A:SER489
|
4.3
|
61.6
|
1.0
|
CA
|
A:SER489
|
4.4
|
60.1
|
1.0
|
CD
|
A:ARG410
|
4.5
|
66.5
|
1.0
|
CD1
|
A:LEU387
|
4.5
|
70.3
|
1.0
|
NZ
|
A:LYS414
|
4.6
|
61.2
|
1.0
|
CE
|
A:LYS414
|
4.8
|
63.0
|
1.0
|
CD1
|
A:TYR411
|
5.0
|
59.3
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 4 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl601
b:80.5
occ:1.00
|
OH
|
B:TYR411
|
2.8
|
70.0
|
1.0
|
OG
|
B:SER489
|
3.1
|
69.7
|
1.0
|
CE1
|
B:TYR411
|
3.6
|
69.6
|
1.0
|
CZ
|
B:TYR411
|
3.6
|
68.3
|
1.0
|
O
|
B:HOH712
|
3.8
|
69.0
|
1.0
|
CB
|
B:SER489
|
3.9
|
68.2
|
1.0
|
CA
|
B:SER489
|
3.9
|
64.5
|
1.0
|
O
|
B:HOH800
|
4.0
|
69.9
|
1.0
|
NH1
|
B:ARG410
|
4.3
|
64.0
|
1.0
|
CD1
|
B:LEU387
|
4.3
|
80.8
|
1.0
|
NZ
|
B:LYS414
|
4.5
|
70.3
|
1.0
|
N
|
B:SER489
|
4.5
|
60.4
|
1.0
|
CE
|
B:LYS414
|
4.6
|
67.8
|
1.0
|
CD
|
B:ARG410
|
4.7
|
62.8
|
1.0
|
CD1
|
B:TYR411
|
4.9
|
63.1
|
1.0
|
CE2
|
B:TYR411
|
5.0
|
57.9
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 5 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:81.9
occ:1.00
|
NZ
|
B:LYS199
|
3.1
|
43.3
|
1.0
|
CH2
|
B:TRP214
|
3.5
|
58.0
|
1.0
|
CE
|
B:LYS195
|
3.7
|
89.7
|
1.0
|
CZ2
|
B:TRP214
|
3.8
|
53.5
|
1.0
|
NZ
|
B:LYS195
|
3.9
|
94.2
|
1.0
|
CE
|
B:LYS199
|
4.0
|
50.5
|
1.0
|
O
|
B:HOH747
|
4.2
|
52.0
|
1.0
|
CG
|
B:LYS195
|
4.6
|
71.2
|
1.0
|
O
|
B:ALA291
|
4.7
|
60.6
|
1.0
|
CZ3
|
B:TRP214
|
4.8
|
62.7
|
1.0
|
CD
|
B:LYS195
|
4.8
|
83.6
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4emx
Go back to
Chlorine Binding Sites List in 4emx
Chlorine binding site 6 out
of 6 in the Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure Analysis of Human Serum Albumin in Complex with Chloride Anions at Cryogenic Temperature within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl603
b:78.4
occ:1.00
|
OH
|
B:TYR150
|
2.8
|
50.7
|
1.0
|
NE
|
B:ARG257
|
3.5
|
69.1
|
1.0
|
CE2
|
B:TYR150
|
3.6
|
49.9
|
1.0
|
CZ
|
B:TYR150
|
3.7
|
54.2
|
1.0
|
CG
|
B:ARG257
|
3.9
|
56.0
|
1.0
|
CB
|
B:ALA291
|
3.9
|
53.6
|
1.0
|
O
|
B:HOH716
|
4.1
|
52.1
|
1.0
|
CD
|
B:ARG257
|
4.1
|
61.7
|
1.0
|
O
|
B:SER287
|
4.1
|
60.0
|
1.0
|
CZ
|
B:ARG257
|
4.3
|
63.3
|
1.0
|
NH2
|
B:ARG257
|
4.4
|
57.2
|
1.0
|
CD1
|
B:LEU238
|
4.5
|
52.3
|
1.0
|
O
|
B:HOH747
|
4.6
|
52.0
|
1.0
|
OG
|
B:SER287
|
4.8
|
68.4
|
1.0
|
NE2
|
B:HIS242
|
4.8
|
45.7
|
1.0
|
C
|
B:SER287
|
4.9
|
56.0
|
1.0
|
CD2
|
B:TYR150
|
5.0
|
59.3
|
1.0
|
|
Reference:
H.Botti,
L.Bonilla,
F.Trajtenberg,
R.Radi,
A.Buschiazzo.
New Insights on B Factors in Crystal Structure Analysis and Crystallographic Model Refinement To Be Published.
Page generated: Sun Jul 21 13:07:44 2024
|