Atomistry » Chlorine » PDB 4emw-4eu4 » 4eof
Atomistry »
  Chlorine »
    PDB 4emw-4eu4 »
      4eof »

Chlorine in PDB 4eof: Lysozyme in the Presence of Arginine

Enzymatic activity of Lysozyme in the Presence of Arginine

All present enzymatic activity of Lysozyme in the Presence of Arginine:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme in the Presence of Arginine, PDB code: 4eof was solved by P.Sharma, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.33 / 1.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.524, 55.509, 72.426, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 24.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Lysozyme in the Presence of Arginine (pdb code 4eof). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Lysozyme in the Presence of Arginine, PDB code: 4eof:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 1 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:22.1
occ:1.00
 N A:SER81 3.2 17.4 1.0
CB A:SER81 3.6 24.6 1.0
O A:ASN65 3.6 18.5 1.0
N A:CYS80 3.7 15.7 1.0
CA A:ASP66 3.7 21.5 1.0
OG A:SER81 3.8 24.9 1.0
CA A:SER81 4.0 21.1 1.0
CB A:ASP66 4.0 20.4 1.0
CB A:CYS80 4.1 17.0 1.0
C A:CYS80 4.1 16.9 1.0
CA A:CYS80 4.1 16.2 1.0
O A:ASP66 4.3 26.5 1.0
C A:ASP66 4.4 18.6 1.0
C A:PRO79 4.4 19.2 1.0
CB A:PRO79 4.5 22.6 1.0
C A:ASN65 4.5 21.4 1.0
N A:ASP66 4.6 19.2 1.0
CA A:PRO79 4.7 20.7 1.0

Chlorine binding site 2 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 2 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:28.1
occ:1.00
 O A:HOH307 3.2 20.5 1.0
ND2 A:ASN93 3.3 22.8 1.0
CA A:ALA90 3.7 15.6 1.0
CB A:ASN93 3.9 13.6 1.0
CB A:ALA90 4.1 17.2 1.0
CG A:ASN93 4.1 23.4 1.0
CD1 A:ILE78 4.4 24.2 1.0
N A:ALA90 4.4 14.4 1.0
O A:THR89 4.5 11.7 1.0
O A:ALA90 4.6 14.8 1.0
O A:HOH308 4.7 25.9 1.0
C A:ALA90 4.7 13.0 1.0
C A:THR89 4.7 13.2 1.0
CG2 A:THR89 4.8 21.9 1.0

Chlorine binding site 3 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 3 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:31.9
occ:1.00
 O A:HOH372 2.8 41.1 1.0
ND2 A:ASN39 3.2 16.1 1.0
ND2 A:ASN37 3.7 27.7 1.0
O3 A:GOL210 3.8 29.2 1.0
CB A:ASN39 4.0 16.2 1.0
CB A:ASN37 4.0 18.6 1.0
CG A:ASN39 4.1 17.5 1.0
O A:ASN37 4.2 16.3 1.0
CG A:ASN37 4.3 28.9 1.0
O A:HOH327 4.4 26.1 1.0
CG2 A:VAL2 4.5 17.9 1.0
O A:SER36 4.5 16.9 1.0
C3 A:GOL210 4.8 44.3 1.0
CG1 A:VAL2 4.9 15.8 1.0
O A:HOH313 4.9 20.4 1.0
C A:ASN37 5.0 16.6 1.0

Chlorine binding site 4 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 4 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:23.5
occ:1.00
 O A:HOH301 3.1 20.8 1.0
N A:ILE88 3.3 17.3 1.0
CA A:ASP87 3.7 16.1 1.0
CG1 A:ILE88 3.8 18.8 1.0
CZ A:PHE3 4.0 16.9 1.0
C A:ASP87 4.0 16.3 1.0
NH2 A:ARG14 4.0 29.5 0.5
OD1 A:ASP87 4.1 21.3 1.0
O A:SER86 4.2 19.3 1.0
CG2 A:ILE88 4.2 11.4 1.0
CG A:ASP87 4.2 23.2 1.0
CB A:ILE88 4.3 14.3 1.0
CA A:ILE88 4.4 14.6 1.0
CB A:ASP87 4.5 20.4 1.0
CB A:ALA11 4.5 17.6 1.0
CE1 A:HIS15 4.6 23.2 1.0
CD1 A:ILE88 4.6 16.2 1.0
NH1 A:ARG14 4.6 23.4 0.5
OD2 A:ASP87 4.6 20.2 1.0
CE2 A:PHE3 4.7 18.2 1.0
O1 A:GOL209 4.8 32.0 0.9
N A:ASP87 4.8 17.9 1.0
CZ A:ARG14 4.8 23.0 0.5
O A:HOH357 4.9 28.7 1.0
CE1 A:PHE3 4.9 18.3 1.0
C A:SER86 4.9 18.8 1.0
O2 A:GOL209 5.0 36.5 0.9

Chlorine binding site 5 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 5 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:46.4
occ:1.00
 O A:HOH310 2.9 22.8 1.0
N A:THR69 2.9 34.0 1.0
N A:ARG68 3.1 33.6 1.0
O A:THR69 3.1 34.9 1.0
N A:GLY67 3.4 27.1 1.0
OD1 A:ASN65 3.5 39.0 1.0
OG A:SER72 3.5 35.5 1.0
CA A:GLY67 3.5 36.0 1.0
C A:GLY67 3.7 44.4 1.0
CA A:THR69 3.7 30.2 1.0
C A:THR69 3.8 35.8 1.0
C A:ARG68 3.9 40.1 1.0
OD1 A:ASP66 3.9 24.5 1.0
CB A:THR69 3.9 28.3 1.0
CA A:ARG68 4.0 36.4 1.0
CB A:SER72 4.0 38.5 1.0
O A:HOH337 4.2 35.3 1.0
C A:ASP66 4.4 18.6 1.0
N A:ASP66 4.4 19.2 1.0
OG1 A:THR69 4.5 22.7 1.0
O A:HOH311 4.6 24.1 1.0
CG A:ASN65 4.6 31.4 1.0
O A:GLY67 4.7 45.4 1.0
CA A:ASP66 5.0 21.5 1.0

Chlorine binding site 6 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 6 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:56.6
occ:1.00
 NH1 A:ARG114 2.7 25.1 1.0
NH2 A:ARG114 3.2 27.0 1.0
ND2 A:ASN113 3.3 33.3 1.0
CZ A:ARG114 3.3 26.7 1.0
CG1 A:VAL109 3.7 31.8 1.0
CA A:ALA110 3.7 22.1 1.0
N A:ALA110 3.9 21.1 1.0
O A:VAL109 4.0 25.7 1.0
C A:VAL109 4.0 19.9 1.0
CB A:ALA110 4.2 25.1 1.0
CB A:ASN113 4.2 26.2 1.0
CG A:ASN113 4.2 29.0 1.0
CB A:VAL109 4.5 30.3 1.0
NE A:ARG114 4.6 23.3 1.0
C A:ALA110 4.9 20.9 1.0
O A:HOH321 4.9 27.1 1.0
CA A:VAL109 5.0 27.4 1.0

Chlorine binding site 7 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 7 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:28.3
occ:1.00
 OG A:SER24 3.0 19.6 1.0
N A:GLY26 3.1 14.0 1.0
CB A:SER24 3.4 17.9 1.0
CA A:GLN121 3.5 21.9 1.0
CA A:GLY26 3.5 13.6 1.0
CD1 A:ILE124 3.9 29.4 1.0
CB A:GLN121 4.0 24.8 1.0
N A:GLN121 4.0 18.4 1.0
N A:LEU25 4.1 15.3 1.0
CG A:GLN121 4.1 30.7 0.7
C A:SER24 4.2 16.0 1.0
C A:LEU25 4.3 15.4 1.0
O A:VAL120 4.3 15.2 1.0
C A:VAL120 4.3 17.3 1.0
CG1 A:ILE124 4.4 22.6 1.0
CA A:SER24 4.5 16.3 1.0
CG2 A:VAL120 4.6 21.3 1.0
CA A:LEU25 4.6 15.9 1.0
C A:GLY26 4.6 16.0 1.0
C A:GLN121 4.6 17.1 1.0
O A:SER24 4.7 14.8 1.0
N A:ASN27 4.7 14.7 1.0
O A:GLN121 4.8 15.9 1.0
CB A:LEU25 4.9 13.2 1.0

Chlorine binding site 8 out of 8 in 4eof

Go back to Chlorine Binding Sites List in 4eof
Chlorine binding site 8 out of 8 in the Lysozyme in the Presence of Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Lysozyme in the Presence of Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:70.7
occ:1.00
 NZ A:LYS13 3.0 37.2 1.0
CD1 A:LEU129 3.8 28.0 1.0
CD1 A:ILE124 3.9 29.4 1.0
CE A:LYS13 4.0 38.5 1.0
CD A:LYS13 4.1 27.5 1.0
OD2 A:ASP18 4.1 32.2 1.0
CB A:LEU129 4.1 29.3 1.0
CD2 A:LEU25 4.2 14.4 1.0
CG A:LEU129 4.5 30.3 1.0
CG A:ASP18 4.9 28.0 1.0

Reference:

P.Sharma, N.Verma, P.K.Singh, S.Korpole, Ashish. Characterization of Heat Induced Spherulites of Lysozyme Reveals New Insight on Amyloid Initiation. Sci Rep V. 6 22475 2016.
ISSN: ESSN 2045-2322
PubMed: 26926993
DOI: 10.1038/SREP22475
Page generated: Sun Jul 21 13:09:22 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy