Atomistry » Chlorine » PDB 4emw-4eu4 » 4err
Atomistry »
  Chlorine »
    PDB 4emw-4eu4 »
      4err »

Chlorine in PDB 4err: 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5

Protein crystallography data

The structure of 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5, PDB code: 4err was solved by G.Minasov, Z.Wawrzak, B.Geissler, L.Shuvalova, I.Dubrovska, J.Winsor, K.J.Satchell, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.22 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.896, 49.874, 72.102, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 21.5

Other elements in 4err:

The structure of 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5 also contains other interesting chemical elements:

Bromine (Br) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5 (pdb code 4err). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5, PDB code: 4err:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4err

Go back to Chlorine Binding Sites List in 4err
Chlorine binding site 1 out of 2 in the 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3702

b:26.9
occ:0.80
O B:HOH3805 2.8 30.5 1.0
O A:HOH3808 2.9 27.8 1.0
N A:GLY3653 3.2 20.8 1.0
BR B:BR3701 3.3 26.2 0.7
CB A:ALA3606 3.7 21.4 1.0
CD1 A:ILE3609 3.7 22.2 1.0
CA A:ALA3606 3.9 21.0 1.0
CA A:SER3652 3.9 23.6 1.0
CB A:SER3652 4.0 24.2 1.0
CG2 A:ILE3609 4.1 22.1 1.0
O B:HOH3886 4.1 33.0 1.0
C A:SER3652 4.1 21.8 1.0
CB A:ILE3609 4.1 20.8 1.0
CA A:GLY3653 4.1 21.1 1.0
NH1 B:ARG3654 4.2 34.1 1.0
O A:ALA3606 4.4 21.7 1.0
CG1 A:ILE3609 4.5 20.8 1.0
O B:HOH3809 4.5 30.5 1.0
C A:ALA3606 4.7 21.4 1.0
O B:HOH3879 4.7 58.5 1.0
O A:HOH3842 4.8 44.3 1.0
CZ B:ARG3654 4.9 34.0 1.0
N A:ARG3654 4.9 22.1 1.0
N A:ALA3606 5.0 19.4 1.0

Chlorine binding site 2 out of 2 in 4err

Go back to Chlorine Binding Sites List in 4err
Chlorine binding site 2 out of 2 in the 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl3702

b:26.4
occ:0.70
O B:HOH3822 2.7 34.1 1.0
O B:HOH3803 3.1 26.2 1.0
N B:GLY3653 3.2 22.4 1.0
BR A:BR3701 3.3 27.5 0.7
CB B:ALA3606 3.7 25.7 1.0
CD1 B:ILE3609 3.8 26.5 1.0
CA B:SER3652 3.9 24.0 1.0
CA B:ALA3606 3.9 24.8 1.0
O B:HOH3857 4.0 39.8 0.5
O B:HOH3809 4.0 30.5 1.0
CG2 B:ILE3609 4.0 24.9 1.0
CB B:SER3652 4.0 24.4 1.0
CB B:ILE3609 4.1 24.0 1.0
C B:SER3652 4.1 22.5 1.0
CA B:GLY3653 4.1 23.8 1.0
NH1 A:ARG3654 4.1 31.4 1.0
O B:ALA3606 4.5 28.0 1.0
CG1 B:ILE3609 4.5 25.1 1.0
O B:HOH3886 4.5 33.0 1.0
CZ A:ARG3654 4.7 27.8 1.0
C B:ALA3606 4.7 27.0 1.0
NH2 A:ARG3654 4.9 33.1 1.0
N B:ALA3606 5.0 24.5 1.0

Reference:

G.Minasov, Z.Wawrzak, B.Geissler, L.Shuvalova, I.Dubrovska, J.Winsor, K.J.Satchell, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio Vulnificus Martx Effector Domain DUF5. To Be Published.
Page generated: Sat Dec 12 10:35:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy