Atomistry » Chlorine » PDB 4eu6-4f1a » 4eum
Atomistry »
  Chlorine »
    PDB 4eu6-4f1a »
      4eum »

Chlorine in PDB 4eum: Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II

Enzymatic activity of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II

All present enzymatic activity of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II:
2.7.1.45;

Protein crystallography data

The structure of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II, PDB code: 4eum was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzymefunction Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.20 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 79.540, 49.528, 83.267, 90.00, 101.50, 90.00
R / Rfree (%) 17.6 / 22.1

Other elements in 4eum:

The structure of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II (pdb code 4eum). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II, PDB code: 4eum:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4eum

Go back to Chlorine Binding Sites List in 4eum
Chlorine binding site 1 out of 4 in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:29.8
occ:1.00
 O A:HOH639 3.7 39.2 1.0
CA A:ASN-6 3.7 24.3 1.0
CB A:ASN-6 3.8 21.5 1.0
O A:GLU-7 4.2 31.6 1.0
N A:LEU-5 4.4 20.2 1.0
C A:ASN-6 4.5 26.1 1.0
O A:HOH675 4.7 49.6 1.0
N A:ASN-6 4.8 23.2 1.0
C A:GLU-7 5.0 31.2 1.0

Chlorine binding site 2 out of 4 in 4eum

Go back to Chlorine Binding Sites List in 4eum
Chlorine binding site 2 out of 4 in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:45.7
occ:1.00
 N A:ARG167 3.2 31.6 1.0
CG A:ARG167 3.3 48.5 1.0
N A:PRO166 3.4 28.9 1.0
C A:ARG165 3.4 22.9 1.0
CD A:PRO166 3.5 24.3 1.0
CA A:ARG165 3.6 27.6 1.0
CB A:ARG167 3.6 41.8 1.0
CB A:ARG165 3.9 27.4 1.0
CA A:ARG167 4.0 33.3 1.0
O A:ARG165 4.0 22.5 1.0
C A:PRO166 4.2 29.7 1.0
CD A:ARG165 4.2 38.6 1.0
CA A:PRO166 4.2 30.0 1.0
CB A:PRO166 4.3 35.6 1.0
CG A:PRO166 4.4 33.1 1.0
CD A:ARG167 4.4 62.4 1.0
CG A:ARG165 4.7 30.5 1.0
N A:LEU168 4.9 22.9 1.0
C A:ARG167 5.0 27.9 1.0

Chlorine binding site 3 out of 4 in 4eum

Go back to Chlorine Binding Sites List in 4eum
Chlorine binding site 3 out of 4 in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.4
occ:1.00
 O A:HOH590 3.0 31.0 1.0
N A:LEU272 3.3 17.5 1.0
NE2 A:GLN233 3.3 24.2 1.0
O A:HOH563 3.4 28.0 1.0
CA A:PRO271 3.9 18.4 1.0
CB A:LEU272 4.0 17.2 1.0
C A:PRO271 4.1 18.6 1.0
CD A:GLN233 4.2 24.6 1.0
CA A:LEU272 4.2 17.2 1.0
OE1 A:GLN233 4.2 21.4 1.0
CB A:PRO271 4.4 25.3 1.0
NH2 A:ARG236 4.6 36.5 1.0
OE1 A:GLU273 4.9 25.4 1.0

Chlorine binding site 4 out of 4 in 4eum

Go back to Chlorine Binding Sites List in 4eum
Chlorine binding site 4 out of 4 in the Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:43.1
occ:1.00
 N B:ARG167 3.2 34.0 1.0
CD B:ARG167 3.3 73.3 1.0
C B:ARG165 3.4 31.5 1.0
N B:PRO166 3.4 31.7 1.0
CB B:ARG167 3.4 45.4 1.0
CA B:ARG165 3.5 25.1 1.0
CD B:PRO166 3.5 33.7 1.0
NE B:ARG167 3.6 84.3 1.0
CB B:ARG165 3.7 26.2 1.0
CG B:ARG167 3.7 58.5 1.0
CA B:ARG167 3.9 35.8 1.0
O B:ARG165 3.9 29.7 1.0
CZ B:ARG167 4.0 85.6 1.0
NH2 B:ARG167 4.1 82.0 1.0
C B:PRO166 4.1 33.6 1.0
CA B:PRO166 4.2 33.1 1.0
CD B:ARG165 4.3 38.0 1.0
CB B:PRO166 4.5 38.1 1.0
CG B:PRO166 4.5 38.5 1.0
CG B:ARG165 4.6 35.6 1.0
NH1 B:ARG167 4.8 85.9 1.0
N B:LEU168 4.8 26.9 1.0
C B:ARG167 4.9 33.9 1.0
N B:ARG165 4.9 25.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Sugar Kinase (Target Efi-502132) From Oceanicola Granulosus with Bound Amp, Crystal Form II To Be Published.
Page generated: Sun Jul 21 13:22:55 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy