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Chlorine in PDB 4f2w: Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A

Enzymatic activity of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A

All present enzymatic activity of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A:
3.2.2.9;

Protein crystallography data

The structure of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A, PDB code: 4f2w was solved by A.M.Haapalainen, K.Thomas, J.B.Bonanno, S.C.Almo, V.L.Schramm, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.18 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.410, 82.540, 93.110, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A (pdb code 4f2w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A, PDB code: 4f2w:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4f2w

Go back to Chlorine Binding Sites List in 4f2w
Chlorine binding site 1 out of 2 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:20.2
occ:1.00
 O A:HOH446 3.0 23.0 1.0
N A:ASP167 3.1 15.9 1.0
O A:HOH444 3.2 25.6 1.0
C A:PHE165 3.5 12.9 1.0
CA A:PHE165 3.6 12.4 1.0
N A:PRO166 3.6 14.2 1.0
CB A:ASP167 3.6 19.7 1.0
CD A:PRO166 3.7 14.8 1.0
CA A:ASP167 3.7 16.9 1.0
CD2 A:LEU144 3.9 9.9 1.0
N A:ALA168 4.0 13.1 1.0
O A:PHE165 4.0 11.6 1.0
C A:ASP167 4.0 15.3 1.0
CB A:PHE165 4.1 11.7 1.0
CG A:ASP167 4.2 23.4 1.0
C A:PRO166 4.2 15.4 1.0
CG A:PRO166 4.2 15.6 1.0
OD2 A:ASP167 4.3 29.0 1.0
CA A:PRO166 4.4 15.3 1.0
CD2 A:PHE165 4.6 11.3 1.0
O A:HOH469 4.6 29.9 1.0
O A:ASN164 4.8 13.6 1.0
N A:PHE165 4.8 12.7 1.0
CG A:PHE165 4.8 11.4 1.0
O A:ASP167 4.9 12.8 1.0
CB A:PRO166 4.9 15.7 1.0

Chlorine binding site 2 out of 2 in 4f2w

Go back to Chlorine Binding Sites List in 4f2w
Chlorine binding site 2 out of 2 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme- Immucillin-A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:20.5
occ:1.00
 N B:ASP167 3.2 15.5 1.0
O B:HOH488 3.2 24.0 1.0
CA B:PHE165 3.4 12.5 1.0
C B:PHE165 3.4 13.2 1.0
O B:HOH520 3.4 23.7 1.0
N B:PRO166 3.5 15.1 1.0
CD B:PRO166 3.6 15.4 1.0
CB B:ASP167 3.7 18.0 1.0
CA B:ASP167 3.8 16.1 1.0
CB B:PHE165 4.0 12.2 1.0
CD2 B:LEU144 4.0 9.5 1.0
N B:ALA168 4.0 13.5 1.0
O B:PHE165 4.0 12.4 1.0
C B:ASP167 4.1 14.3 1.0
CG B:PRO166 4.2 16.1 1.0
C B:PRO166 4.2 15.8 1.0
CA B:PRO166 4.4 15.6 1.0
O B:HOH532 4.4 28.4 1.0
CG B:ASP167 4.5 21.1 1.0
O B:HOH499 4.5 33.8 1.0
CD2 B:PHE165 4.5 12.2 1.0
O B:ASN164 4.6 15.3 1.0
N B:PHE165 4.6 12.8 1.0
OD2 B:ASP167 4.7 24.4 1.0
CG B:PHE165 4.7 11.8 1.0
O B:ASP167 5.0 14.3 1.0
CB B:PRO166 5.0 16.0 1.0

Reference:

A.M.Haapalainen, K.Thomas, P.C.Tyler, G.B.Evans, S.C.Almo, V.L.Schramm. Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Salmonella Enterica with Methyl-Thio-Dadme-Immucillin-A Structure V. 21 963 2013.
ISSN: ISSN 0969-2126
PubMed: 23685211
DOI: 10.1016/J.STR.2013.04.009
Page generated: Sun Jul 21 13:32:22 2024

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